New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4042896	60 (0.970)	4 (0.070)	4/334	NT	6.3%	coding (848/978 nt)	PP_3564	Transcriptional regulator, AraC family
	?	AE015451	= 4042909	60 (1.000)					coding (835/978 nt)	PP_3564	Transcriptional regulator, AraC family

CTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACG  >  AE015451/4042698‑4043131                                                                                                                                                                                                                    |                                                                                                                                                                                                                               cTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAgcg                                                                                                                                                                                                           >  2:498296/1‑233 (MQ=255)             ccccAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCac                                                                                                                                                                                                              >  1:802916/1‑217 (MQ=255)                 aaGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         >  1:896764/1‑235 (MQ=255)                    agCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTg                                                                                                                                                                                     >  1:402403/1‑236 (MQ=255)                    agCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCCGGAGTTGAGCAAACGcca                                                                                                                                                                                                                             <  2:522025‑M2/196‑4 (MQ=255)                        aTGCAGGGAGCTACTGGACAGGGTTGTTCGGGACGCCTCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCGACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTTCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAg                                                                                                                                                                                           <  2:1040710/226‑1 (MQ=255)                           cAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCaa                                                                                                                                                                                                              >  1:751923/1‑204 (MQ=255)                           cAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCa                                                                                                                                                                              >  1:948768/1‑236 (MQ=255)                             gggATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       <  1:961384/225‑1 (MQ=255)                                  cTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCg                                                                                                                                                                         <  1:721270/234‑1 (MQ=255)                                      tGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGtgg                                                                                                                                                                      >  2:405647/1‑233 (MQ=255)                                                tgttCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGaa                                                                                                                                                           >  1:473355/1‑234 (MQ=255)                                                tgttCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAAc                                                                                                                                                          >  1:856772/1‑235 (MQ=255)                                                   tCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGcccgcgag                                                                                                                                                                                                                        <  2:160631‑M2/170‑9 (MQ=255)                                                     gggACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggc                                                                                                                                                                                                                <  2:20419‑M2/176‑17 (MQ=255)                                                         cgccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         <  2:767393/195‑1 (MQ=255)                                                          gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCCGGCCTTGGTGCTCATCCCGTTGCTGGCCt                                                                                                                                                               >  2:539656/1‑220 (MQ=255)                                                          gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAg                                                                                                                                               >  1:690062/1‑236 (MQ=255)                                                          gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAg                                                                                                                                               >  1:508992/1‑236 (MQ=255)                                                               aGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGGATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTTGAACTGCCGGTCCAGTTGAc                                                                                                                                          >  1:124570/1‑236 (MQ=255)                                                                      cACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgc                                                                                                                                                            >  1:20419‑M2/1‑143 (MQ=255)                                                                       aCGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGcc                                                                                                                                                                                                <  2:728859/174‑1 (MQ=255)                                                                         gTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGAt                                                                                                                                <  1:776910/236‑1 (MQ=255)                                                                            ggCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCGCTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         <  2:797359/175‑1 (MQ=255)                                                                            aGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTcc                                                                                                                                                                                                    >  2:940440/1‑165 (MQ=255)                                                                              cGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCATACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGGCACCAGGCCTTGGTGCt                                                                                                                                                                                >  2:530059/1‑183 (MQ=255)                                                                              cGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGa                                                                                                                                 >  2:981625/1‑230 (MQ=255)                                                                                              cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCtc                                                                                                                                                                                      >  2:115784/1‑160 (MQ=255)                                                                                              cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       <  1:240825/160‑1 (MQ=255)                                                                                              cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       >  2:240824/1‑160 (MQ=255)                                                                                              cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCgg                                                                                                                                                    >  2:241860/1‑195 (MQ=255)                                                                                               gCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGCGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGCGCTCAGACCCTGGCTGGCCTGGAACGGCCGGTc                                                                                                                                                  >  2:156988/1‑196 (MQ=255)                                                                                                 aaCTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAgctgc                                                                                                          <  2:690061/234‑1 (MQ=255)                                                                                                     gCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACg                                                                                                    >  1:872075/1‑236 (MQ=255)                                                                                                       aGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGCACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCCCCACGGc                                                                                                  >  1:817633/1‑236 (MQ=255)                                                                                                       aGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCGCATACCGtggctggc                                                                                                                                                                 >  2:268965/1‑173 (MQ=255)                                                                                                                 acCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAgctg                                                                                                           >  1:357513/1‑217 (MQ=255)                                                                                                                 acCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGATGAGCAAACGCCAGCGCGCCTGCTCCAAGCGCATCTCCAGCCACCAGGCCTCgg                                                                                                                                                                                    >  2:261765/1‑144 (MQ=255)                                                                                                                      aaCCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTc                                                                                                        >  2:536709/1‑215 (MQ=255)                                                                                                                        ccGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCacg                                                                                                                                                                                                             >  1:902903/1‑110 (MQ=255)                                                                                                                          gACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGa                                                                               <  1:591897/236‑1 (MQ=255)                                                                                                                          gACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCCGCtgctgc                                                                                                                              >  2:1029042/1‑189 (MQ=255)                                                                                                                                        ttGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTc                                                                                                        <  1:186921/197‑1 (MQ=255)                                                                                                                                          gCCAAGGTAGCGGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCa                                                                                                                                                <  2:104524/155‑1 (MQ=255)                                                                                                                                           ccAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCt                                                                <  1:215702/234‑1 (MQ=255)                                                                                                                                               ggTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccg                                                                                                      >  1:604874‑M2/1‑70 (MQ=255)                                                                                                                                                   gCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGccc                                                         >  2:444809/1‑233 (MQ=255)                                                                                                                                                   gCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGc                                                       >  1:968797/1‑235 (MQ=255)                                                                                                                                                     tGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCa                                                                                                                                                                                                   >  1:524422/1‑93 (MQ=255)                                                                                                                                                     tGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCa                                                                                                                                                                                                   <  2:524421/93‑1 (MQ=255)                                                                                                                                                            aCCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcgttaccg                                                                                                       <  2:604873‑M2/178‑122 (MQ=255)                                                                                                                                                                    ccACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGGGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGccg                                                     >  1:197398/1‑218 (MQ=255)                                                                                                                                                                        cTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAg                                 >  1:544467/1‑236 (MQ=255)                                                                                                                                                                          cATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACaa                                  >  2:722454/1‑233 (MQ=255)                                                                                                                                                                               gCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCAcc                             >  2:770157/1‑233 (MQ=255)                                                                                                                                                                                     tGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCa                     >  1:591651/1‑235 (MQ=255)                                                                                                                                                                                        gcCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCGGGTGGTGGCGCAt                                                                       >  1:398227/1‑182 (MQ=255)                                                                                                                                                                                         aggcctggtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCagcgag                >  1:991549/8‑236 (MQ=255)                                                                                                                                                                                          cAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCagcgagc               <  1:1019894/236‑1 (MQ=255)                                                                                                                                                                                           gcctggtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAg                                                                                   >  1:938108/6‑167 (MQ=255)                                                                                                                                                                                             gCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCCCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGa                                                                               >  2:927659/1‑169 (MQ=255)                                                                                                                                                                                                gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGcc                                                                                                                                                                                        <  1:142063/61‑1 (MQ=255)                                                                                                                                                                                                gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGcc                                                                                                                                                                                        >  2:142063/1‑61 (MQ=255)                                                                                                                                                                                                gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCCCGGCCAACGGCGTGCCCCGGGGGTGGCGCATCAgg                                                                   >  2:201616/1‑177 (MQ=255)                                                                                                                                                                                                      ggAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGa    <  1:539657/235‑1 (MQ=255)                                                                                                                                                                                                       gAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACg  <  1:241861/236‑1 (MQ=255)                                                                                                                                                                                                                    |                                                                                                                                                                                                                               CTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACG  >  AE015451/4042698‑4043131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.