New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4042896	60 (0.970)	4 (0.070)	4/334	NT	6.3%	coding (848/978 nt)	PP_3564	Transcriptional regulator, AraC family
	?	AE015451	= 4042909	60 (1.000)					coding (835/978 nt)	PP_3564	Transcriptional regulator, AraC family

TGATGAATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACG  >  AE015451/4042664‑4043131                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            tgatgaATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCCATCTGCGCCAGGCTGTGGCTGGAGt                                                                                                                                                                                                                                          >  1:164590/1‑236 (MQ=255)                                   cTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAgcg                                                                                                                                                                                                           >  2:498296/1‑233 (MQ=255)                                               ccccAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCac                                                                                                                                                                                                              >  1:802916/1‑217 (MQ=255)                                                   aaGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         >  1:896764/1‑235 (MQ=255)                                                      agCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTg                                                                                                                                                                                     >  1:402403/1‑236 (MQ=255)                                                      agCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCCGGAGTTGAGCAAACGcca                                                                                                                                                                                                                             <  2:522025‑M2/196‑4 (MQ=255)                                                          aTGCAGGGAGCTACTGGACAGGGTTGTTCGGGACGCCTCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCGACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTTCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAg                                                                                                                                                                                           <  2:1040710/226‑1 (MQ=255)                                                             cAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCaa                                                                                                                                                                                                              >  1:751923/1‑204 (MQ=255)                                                             cAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCa                                                                                                                                                                              >  1:948768/1‑236 (MQ=255)                                                               gggATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       <  1:961384/225‑1 (MQ=255)                                                                    cTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCg                                                                                                                                                                         <  1:721270/234‑1 (MQ=255)                                                                        tGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGtgg                                                                                                                                                                      >  2:405647/1‑233 (MQ=255)                                                                                  tgttCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCCAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCaa                                                                                                                                                                                                                                   >  2:215701/1‑162 (MQ=255)                                                                                  tgttCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGaa                                                                                                                                                           >  1:473355/1‑234 (MQ=255)                                                                                  tgttCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAAc                                                                                                                                                          >  1:856772/1‑235 (MQ=255)                                                                                     tCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGcccgcgag                                                                                                                                                                                                                        <  2:160631‑M2/170‑9 (MQ=255)                                                                                       gggACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggc                                                                                                                                                                                                                <  2:20419‑M2/176‑17 (MQ=255)                                                                                           cgccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         <  2:767393/195‑1 (MQ=255)                                                                                            gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAAcca                                                                                                                                                                                                                               >  2:381971/1‑154 (MQ=255)                                                                                            gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCCGGCCTTGGTGCTCATCCCGTTGCTGGCCt                                                                                                                                                               >  2:539656/1‑220 (MQ=255)                                                                                            gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAg                                                                                                                                               >  1:508992/1‑236 (MQ=255)                                                                                            gccgcAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAg                                                                                                                                               >  1:690062/1‑236 (MQ=255)                                                                                                 aGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGGATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTTGAACTGCCGGTCCAGTTGAc                                                                                                                                          >  1:124570/1‑236 (MQ=255)                                                                                                        cACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgc                                                                                                                                                            >  1:20419‑M2/1‑143 (MQ=255)                                                                                                         aCGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGcc                                                                                                                                                                                                <  2:728859/174‑1 (MQ=255)                                                                                                           gTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGAt                                                                                                                                <  1:776910/236‑1 (MQ=255)                                                                                                              ggCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCGCTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGc                                                                                                                                                                                         <  2:797359/175‑1 (MQ=255)                                                                                                              aGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTcc                                                                                                                                                                                                    >  2:940440/1‑165 (MQ=255)                                                                                                                cGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCATACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGGCACCAGGCCTTGGTGCt                                                                                                                                                                                >  2:530059/1‑183 (MQ=255)                                                                                                                cGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGcgtttgctcaactccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctacc                                                                                                                                                                       >  1:604874‑M1/1‑122 (MQ=255)                                                                                                                cGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGa                                                                                                                                 >  2:981625/1‑230 (MQ=255)                                                                                                                 cggtAACGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGcgtttgctcaactccagccacagcctggcgcagattgccgatgaggtgggcctgggt                                                                                                                                                                                    <  2:604873‑M1/177‑58 (MQ=255)                                                                                                                            tGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGACTGTGGCTGG                                                                                                                                                                                                                                             >  2:155976‑M1/1‑110 (MQ=255)                                                                                                                                cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCtc                                                                                                                                                                                      >  2:115784/1‑160 (MQ=255)                                                                                                                                cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       <  1:240825/160‑1 (MQ=255)                                                                                                                                cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCt                                                                                                                                                                                       >  2:240824/1‑160 (MQ=255)                                                                                                                                cGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCgg                                                                                                                                                    >  2:241860/1‑195 (MQ=255)                                                                                                                                 gCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGCGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGCGCTCAGACCCTGGCTGGCCTGGAACGGCCGGTc                                                                                                                                                  >  2:156988/1‑196 (MQ=255)                                                                                                                                   aaCTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAgctgc                                                                                                          <  2:690061/234‑1 (MQ=255)                                                                                                                                       gCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACg                                                                                                    >  1:872075/1‑236 (MQ=255)                                                                                                                                         aGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGCACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCCCCACGGc                                                                                                  >  1:817633/1‑236 (MQ=255)                                                                                                                                         aGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCGCATACCGtggctggc                                                                                                                                                                 >  2:268965/1‑173 (MQ=255)                                                                                                                                                   acCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAgctg                                                                                                           >  1:357513/1‑217 (MQ=255)                                                                                                                                                   acCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGATGAGCAAACGCCAGCGCGCCTGCTCCAAGCGCATCTCCAGCCACCAGGCCTCgg                                                                                                                                                                                    >  2:261765/1‑144 (MQ=255)                                                                                                                                                        aaCCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTc                                                                                                        >  2:536709/1‑215 (MQ=255)                                                                                                                                                          ccGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCacg                                                                                                                                                                                                             >  1:902903/1‑110 (MQ=255)                                                                                                                                                            gACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGa                                                                               <  1:591897/236‑1 (MQ=255)                                                                                                                                                            gACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCCGCtgctgc                                                                                                                              >  2:1029042/1‑189 (MQ=255)                                                                                                                                                                      gcacTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGcgtttgctcaactccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccgctcacgtg                                                                                              >  1:20419‑M1/1‑68 (MQ=255)                                                                                                                                                                          ttGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTc                                                                                                        <  1:186921/197‑1 (MQ=255)                                                                                                                                                                            gCCAAGGTAGCGGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCa                                                                                                                                                <  2:104524/155‑1 (MQ=255)                                                                                                                                                                             ccAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCt                                                                <  1:215702/234‑1 (MQ=255)                                                                                                                                                                                 ggTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccg                                                                                                      >  1:604874‑M2/1‑70 (MQ=255)                                                                                                                                                                                     gCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGccc                                                         >  2:444809/1‑233 (MQ=255)                                                                                                                                                                                     gCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGc                                                       >  1:968797/1‑235 (MQ=255)                                                                                                                                                                                       tGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCa                                                                                                                                                                                                   >  1:524422/1‑93 (MQ=255)                                                                                                                                                                                       tGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCa                                                                                                                                                                                                   <  2:524421/93‑1 (MQ=255)                                                                                                                                                                                              aCCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcgttaccg                                                                                                       <  2:604873‑M2/178‑122 (MQ=255)                                                                                                                                                                                                      ccACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGGGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGccg                                                     >  1:197398/1‑218 (MQ=255)                                                                                                                                                                                                          cTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAg                                 >  1:544467/1‑236 (MQ=255)                                                                                                                                                                                                            cATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACaa                                  >  2:722454/1‑233 (MQ=255)                                                                                                                                                                                                                 gCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCAcc                             >  2:770157/1‑233 (MQ=255)                                                                                                                                                                                                                       tGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCa                     >  1:591651/1‑235 (MQ=255)                                                                                                                                                                                                                          gcCAGGCTGTGGCTGGcgtttgctcaactccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccgctcacgtgatctactgcggcgtccc                                                                             <  2:20419‑M1/176‑161 (MQ=255)                                                                                                                                                                                                                          gcCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCGGGTGGTGGCGCAt                                                                       >  1:398227/1‑182 (MQ=255)                                                                                                                                                                                                                           aggcctggtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCagcgag                >  1:991549/8‑236 (MQ=255)                                                                                                                                                                                                                            cAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCagcgagc               <  1:1019894/236‑1 (MQ=255)                                                                                                                                                                                                                             gcctggtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAg                                                                                   >  1:938108/6‑167 (MQ=255)                                                                                                                                                                                                                               gCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCCCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGa                                                                               >  2:927659/1‑169 (MQ=255)                                                                                                                                                                                                                                  gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGcc                                                                                                                                                                                        >  2:142063/1‑61 (MQ=255)                                                                                                                                                                                                                                  gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGcc                                                                                                                                                                                        <  1:142063/61‑1 (MQ=255)                                                                                                                                                                                                                                  gtgGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCCCGGCCAACGGCGTGCCCCGGGGGTGGCGCATCAgg                                                                   >  2:201616/1‑177 (MQ=255)                                                                                                                                                                                                                                  ctcgcgggcgtttgctcaactccagccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccgctcacgtgatctactgcggcgtcccga                                                                           <  2:160631‑M1/164‑163 (MQ=255)                                                                                                                                                                                                                                       tggcgtttgctcaactccggccacagcctggcgcagattgccgatgaggtgggcctgggtgatgccagctaccttggcaagtgcgtgcggcgtcggtttgggtgtacggccctgcagttgcgtgcaggtcattacccgctcacgtgatctactgcggcgtcccgaacaaccctgtccagtagatccctgcatcgct                                            <  2:522025‑M1/196‑194 (MQ=255)                                                                                                                                                                                                                                        ggAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGa    <  1:539657/235‑1 (MQ=255)                                                                                                                                                                                                                                         gAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACg  <  1:241861/236‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            TGATGAATCCGGACTTCCGTGAACTGGGCGCTGCCTATGCGATAGACCCCAAGAGCGATGCAGGGATCTACTGGACAGGGTTGTTCGGGACGCCGCAGTAGATCACGTGAGCGGGTAATGACCTGCACGCAACTGCAGGGCCGTACACCCAAACCGACGCCGCACGCACTTGCCAAGGTAGCTGGCATCACCCAGGCCCACCTCATCGGCAATCTGCGCCAGGCTGTGGCTGGAGTTGAGCAAACGCCAGCGCGCCTGCTGCAAGCGCATCTCCAGCCACCAGGCCTTGGTGCTCATACCGTGGCTGGCCTGGAACTGCCGGTCCAGTTGACGCCGGCTGATGCCCAGTTCTGCGGCCAGCTGCTCCACGGCCAACGGCGTGCCCAGGTGATGGCGCATCAGTGCTTGCGCCCGCTGCACCTGGCGCCCCTGACAAGCACCCAGCTCCAGCGAGCGCAAGGCGTGACG  >  AE015451/4042664‑4043131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.