New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4062647	52 (0.840)	3 (0.050)	3/322	NT	5.9%	coding (1692/2088 nt)	PP_3581	conserved membrane protein of unknown function
	?	AE015451	= 4062757	47 (0.810)					coding (1582/2088 nt)	PP_3581	conserved membrane protein of unknown function

ACAAGTCCACGCCCATGTCGGACAGGCGCTGCAGCACGGTCAGGCTGGCATCGGCATCGTGCATGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4062577‑4062647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatggcggtgAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGGTCGACAGCGTGGCCCGCGCCCTGCAGCAGAACGGCTTGCCAGCCAACTGCCTGACACTGGAAATTACCGAAACCACCGCCATGCACGATGCCGATGCCAGCCTGACCGTGCTGCAGCGCCTGTCCGACATGGGC  <  AE015451/4062757‑4062587                                                                                                                                                                                                                                                    ACAAGTCCACGCCCATGTCGGACAGGCGCTGCAGCACGGTCAGGCTGGCATCGGCATCGTGCATGGCGGTGAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGG                                                                                                                                        <  1:1019570/108‑1 ACAAGTCCACGCCCATGTCGGACAGGCGCTGCAGCACGGTCAGGCTGGCATCGGCATCGTGCATGGCGGTGAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGG                                                                                                                                        >  2:1019569/1‑108                   CGGACAGGCGCTGCAGCACGGTCAGGCTGGCATCGGCATCGTGCATGGCGGTGAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGGTCGACAGCGTGGCCCGCGCCCTGCAGCAGAACGGCTTGCCAGCCAACTGCCTGACACTGGAAATTACCGCAACCACCG                                                          >  1:1088190/1‑168                                                                    GGTGAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGGTCGACAGCGTGGCCCGCGCCCTGCAGCAGAACGGCTTGCCAGCCAACTGCCTGACACTGGAAATTACCGAAACCACCGCCATGCACGATGCCGATGCCAGCCTGACCGTGCTGCAGCGCCTGTCCGACATGGGC  <  2:553247/175‑1                                                                                                                                                                                                                                                    ACAAGTCCACGCCCATGTCGGACAGGCGCTGCAGCACGGTCAGGCTGGCATCGGCATCGTGCATGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4062577‑4062647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatggcggtgAACCTGTCGGCCATCCAGTTCTGCCATGCCGGTCTGGTCGACAGCGTGGCCCGCGCCCTGCAGCAGAACGGCTTGCCAGCCAACTGCCTGACACTGGAAATTACCGAAACCACCGCCATGCACGATGCCGATGCCAGCCTGACCGTGCTGCAGCGCCTGTCCGACATGGGC  <  AE015451/4062757‑4062587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.