New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4399867 =	78 (1.260)	7 (0.120)	6/328	NT	9.5%	coding (23/972 nt)	PP_3878	putative Phage minor capsid protein C
	?	AE015451	4399923 =	59 (1.000)					coding (1235/1272 nt)	PP_3879	Phage portal protein, HK97 family

GCCTATGCAATTGGCCGGCAGTGGGGGTGGCTGTCGATCAACGACATCCGGCGCCTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4400095‑4399867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgcTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGCCAATTGCATAGGCGTCGTAGCGGCTTTTCTGGTCGCCG  >  AE015451/4399923‑4400120                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCTATGCAATTGGCCGGCAGTGGGGGTGGCTGTCGATCAACGACATCCGGCGCCTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCG                                                                                                                                                                                                              <  1:835150/223‑1                                      TCAACGACCTCCGGCGCCTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGCCCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCA                                                                                                                                                                                                 <  1:355663/199‑1                                                   GCGCCTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCAGCTGGGC                                                                                                                                                                                          <  2:902037/193‑1                                                       CTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTC                                                                                                                                                                       <  1:940444/208‑1                                                               CATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTC                                                                                                                                                                                                   <  1:513665/172‑1                                                                            GCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTC                                                                                                                                                                       <  1:1097282/187‑1                                                                                                                                 CCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCA                                                                                                                         >  1:678/1‑180                                                                                                                                                                 CCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGCCATGT                                                                                                                                     >  2:194227/1‑136                                                                                                                                                                     GCTGGAACAGCAGCGCGACGACATCCTGAGGCTGCTTGCCGCATGAAACGACATTGGCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAG                                                                                                                                 <  2:1034312/136‑1                                                                                                                                                                                                                              CGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGCCAATTGCATAGGCGTCGTAGCGGCTTTTCTGGTCGCCG  >  2:781245/1‑206                                                                                                                                                                                                                              CGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAG                                                                                                                                 <  1:567209/79‑1                                                                                                                                                                                                                              CGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAG                                                                                                                                 >  2:567208/1‑79                                                                                                                                                                                                                                  CTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGCCAATTGCA                                <  2:819626/172‑1                                                                                                                                                                                                                                   TGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGCCAATTGCATAGGCGTCGTAGCG                  >  2:863068/1‑185                                                                                                                                                                                                                                     CTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGC                                        <  2:537123/161‑1                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCTATGCAATTGGCCGGCAGTGGGGGTGGCTGTCGATCAACGACATCCGGCGCCTGGAAAACATGCCGCCCGTTGCCAACGGCGACAGTTATCTGCAGCCGCTCAACATGACCGACGTAGCCAATGACCTGCCCGACATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4400095‑4399867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgcTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGGCAACGGGCGGCATGTTTTCCAGGCGCCGGATGTCGTTGATCGACAGCCACCCCCACTGCCGGCCAATTGCATAGGCGTCGTAGCGGCTTTTCTGGTCGCCG  >  AE015451/4399923‑4400120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.