New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4701761 =	57 (0.920)	4 (0.070)	4/324	NT	7.2%	coding (1699/2055 nt)	kdpB	K+ transporting ATPase, KdpB subunit
	?	AE015451	4701808 =	50 (0.860)					coding (1652/2055 nt)	kdpB	K+ transporting ATPase, KdpB subunit

CGGGGGTCGATGACGTGCTGGCCGAGGCCACGCCCGAGAAGAAGCTGGCGCGCATTCGCCAGGAGCAGAATGACGGCCGCCTGGTTGCCATGTGTGGCGACGGTGCCAACGACGCCCCGGCACTAGCCCAGGCTGACGTAGGCATGGCCATGAACGACGGCACTCAGGCTGCGCGGGAGGCCGCGAACATGGTCGACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4702000‑4701761 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccaggtcgACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCAGGCGGCCGTCATTCTGCTCCTGGCGAATGCGCGCCAGCTTCTTCTCGGGCGTGGCCTCGGCCAGCACGTCATCGACCCCCGCTTCGGCGGCGATGGCGGCCGCAGTCAACGGGTTGTCG  >  AE015451/4701808‑4702038                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGGGGGTCGATGACGTGCTGGCCGAGGCCACGCCCGAGAAGAAGCTGGCGCGCATTCGCCAGGAGCAGAATGACGGCCGCCTGGTTGCCATGTGTGGCGACGGTGCCAACGACGCCCCGGCACTAGCCCAGGCTGACGTAGGCATGGCCATGAACGACGGCACTCAGGCTGCGCGGGAGGCCGCGAACATGGTCGACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCA                                                                                                                                                                                                                                              <  1:17291/235‑1                                                                                                                                                     CATGAACGACGGCACTCAGGCTGCGCGGGAGGCCGCGAACATGGTCGACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCA                                                                                                                                                                                                                                              >  1:523624/1‑87                                                                                                                                                     CATGAACGACGGCACTCAGGCTGCGCGGGAGGCCGCGAACATGGTCGACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCA                                                                                                                                                                                                                                              <  2:523623/87‑1                                                                                                                                                                                                    ACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCAGGTCGACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCA                                                                                                                         <  1:30502/157‑1                                                                                                                                                                                                    ACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCAGGTCGACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCA                                                                                                                         >  2:30502/1‑157                                                                                                                                                                                                                 CCCGACCAAGCTGCTGGACGTAGTCCAGGTCGACCATGTTCGCGGCCTCCCG                                                                                                                                                                                                                     >  1:148321/1‑52                                                                                                                                                                                                                 CCCGACCAAGCTGCTGGACGTAGTCCAGGTCGACCATGTTCGCGGCCTCCCG                                                                                                                                                                                                                     <  2:148321/52‑1                                                                                                                                                                                                                                          CAGGTCGACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCAGGCGGCCGTCATTCTGCTCCTGGCGAATGCGCGCCAGCTTCTTCTCGGGCGTGGCCTCGGCCAGCACGTCATCGACCCCCGCTTCGGCGGCGATGGCGGCCGCAGTCAACGGG        >  2:970930/1‑232                                                                                                                                                                                                                                              TCGACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCAGGCGGCCGTCATTCTGCTCCTGGCGAATGCGCGCCAGCTTCTTCTCGGGCGTGGCCTCGGCCAGCACGTCATCGACCCCCGCTTCGGCGGCGATGGCGGCCGCAGTCAACGGGTTGTCG  <  1:821682/234‑1                                                                                                                                                                                                                                              TCGACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCAGGCGGCCGTCATTCTGCTCCTGGCGAATGCGCGCCAGCTTCTTCTCGGGCGTGGCCTCGGCCAGCACGTCATCGACCCCCGCTTCGGCGGCGATGGCGG                      <  1:171169/214‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGGGGGTCGATGACGTGCTGGCCGAGGCCACGCCCGAGAAGAAGCTGGCGCGCATTCGCCAGGAGCAGAATGACGGCCGCCTGGTTGCCATGTGTGGCGACGGTGCCAACGACGCCCCGGCACTAGCCCAGGCTGACGTAGGCATGGCCATGAACGACGGCACTCAGGCTGCGCGGGAGGCCGCGAACATGGTCGACCTGGACAGCGACCCGACCAAGCTGCTGGACGTAGTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4702000‑4701761 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccaggtcgACCATGTTCGCGGCCTCCCGCGCAGCCTGAGTGCCGTCGTTCATGGCCATGCCTACGTCAGCCTGGGCTAGTGCCGGGGCGTCGTTGGCACCGTCGCCACACATGGCAACCAGGCGGCCGTCATTCTGCTCCTGGCGAATGCGCGCCAGCTTCTTCTCGGGCGTGGCCTCGGCCAGCACGTCATCGACCCCCGCTTCGGCGGCGATGGCGGCCGCAGTCAACGGGTTGTCG  >  AE015451/4701808‑4702038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.