New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4913718	38 (0.610)	4 (0.070)	4/324	NT	9.3%	coding (981/1989 nt)	ccmF	holocytochrome c synthetase
	?	AE015451	= 4913758	42 (0.720)					coding (941/1989 nt)	ccmF	holocytochrome c synthetase

AGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4913584‑4913718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgaccCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGAAACGCTGCTGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCGGTACCCTGTACCCATTGGTGCTCGATGCCCTGACCGGGGCCAAGCTGTCGGTCGG  <  AE015451/4913758‑4913524                                                                                                                                                                                                                                                                                                                                                                                    AGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAG                                                                                                                                                                                                                                                      >  1:739713/1‑126                                                                 ACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGC                                                                                                                                                                                       >  2:486473/1‑125                                                                                             CACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGC                                                                                                                                                 >  2:474081/1‑135                                                                                                   TGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTGTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGC                                                                                                                                                                     >  2:1049308/1‑109                                                                                                          AGGGCGAACAGGGTGAGCGAGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGACACGCTGCTGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCGG                                                        >  2:698111/1‑211                                                                                                                         AGCGAGCCGCCGACCCGTCGCGGGGGATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGAAACGCTGCTGCTGG                                                                                                      >  1:166155/1‑150                                                                                                                                CGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGAAACGCTGCTGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCGGTACCCTGTACCCATTGGTGCTCGATGCCCTGACCGGGGCCAAGCT           >  1:955914/1‑234                                                                                                                                       CCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGAAACGCTGCGGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCGGTACCCTGTACCCATTGGGGCTCGATGCCCTGACCGGGGCCAAGCTGTCGGGCGG  >  1:306163/1‑236                                                                                                                                                                                                                                                                                                                                                                                    AGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4913584‑4913718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgaccCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGGTTTCGCCCTGTGGTCGCGTGAAACGCTGCTGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCGGTACCCTGTACCCATTGGTGCTCGATGCCCTGACCGGGGCCAAGCTGTCGGTCGG  <  AE015451/4913758‑4913524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.