New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5439097	48 (0.780)	3 (0.050)	3/326	NT	7.8%	coding (259/633 nt)	rluE	23S rRNA pseudouridine 2457 synthase
	?	AE015451	= 5439256	25 (0.430)					coding (100/633 nt)	rluE	23S rRNA pseudouridine 2457 synthase

CAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5438992‑5439097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcctgATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACCGCGACAGCGAAGGCTTGCTGTTGCTGACCAACGATGGCGGGTTGCAGGCGCGGATTGCCGATCCGAAGCACAAGCTGGCCAAGACCTACTGGGTGCAGGTGGAGGGTGAACCGAGTG  <  AE015451/5439256‑5439025                                                                                                                                                                                                                                                                                                                                                    CAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTG                                                                                                                                                                                                                                          <  2:1020457/106‑1                                          TCACCCTCCACCCGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTT                                                                                                                                                                                                    <  2:1057946/103‑1                                                           CCAGTAGGTCTTGGCCAGCTTGTGCCTCGGATCGGCCATCCGCGCCTGATCCTGTTCAACAAACCGTTCGATGTGC                                                                                                                                                                                                              >  1:189518/1‑76                                                               TAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACAGCGACAGC                                                                                                               >  2:982943/1‑167                                                                                                   CGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACCGCGACAGCGAAGGCTTGCTGTTGCTGACCAACGATGGCGGGTTGCAGGCGCGGATTGCCGATCCGAAGCACAAGCTGGCCAAGACCTACTGGGTGCAGGTGGAG               <  2:562785/227‑1                                                                                                    GCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACCGCGACAGCGAAGGCTTGCTGTTGCTGACCAACGATGGCGGGTTGCAGGCGCGGATTGCCGATCCGAAGCACAAGCTGGCCAAGACCTACTGGGTGCAGGTGGAGGGTGAACCGA     >  1:54225/1‑236                                                                                                    GCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGG                                                                                                                                      <  2:1036547/107‑1                                                                                                        CTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACCGCGACAGCGAAGGCTTGCTGTTGCTGACCAACGATGGCGGGTTGCAGGCGCGGATTGCCGATCCGAAGCACAAGCTGGCCAAGACCTACTGGGTGCAGGTGGAGGGTGAACCGAGTG  >  1:745421/1‑235                                                                                                                                                                                                                                                                                                                                                    CAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5438992‑5439097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcctgATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATACCCGGCCGGGCGGCTGGACCGCGACAGCGAAGGCTTGCTGTTGCTGACCAACGATGGCGGGTTGCAGGCGCGGATTGCCGATCCGAAGCACAAGCTGGCCAAGACCTACTGGGTGCAGGTGGAGGGTGAACCGAGTG  <  AE015451/5439256‑5439025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.