New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5439097	48 (0.780)	3 (0.050)	3/326	NT	7.8%	coding (259/633 nt)	rluE	23S rRNA pseudouridine 2457 synthase
	?	AE015451	= 5439256	25 (0.430)					coding (100/633 nt)	rluE	23S rRNA pseudouridine 2457 synthase

GAATCACCAGTTCCAGCCAGCTGGTCGGCACGCTCTTGCGAAACCGTACCGGCGGGTTACGCGGCCACAGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCGGCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGC  >  AE015451/5438866‑5439329                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         gAATCACCAGTTCCAGCCAGCTGGTCGGCACGCTCTTGCGAAACCGTACCGGCGGGTTACGCGGCCACAGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCa                                                                                                                                                                                                                                        >  2:670298/1‑234 (MQ=255)         aGTTCCAGCCAGCTGGTCGGCACGCTCTTGCGAAACCGTACCGGCGGGTTACGCGGCCACAGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATc                                                                                                                                                                                                                              >  2:510940/1‑236 (MQ=255)                                            ccGTACCGGCGGGTTACGCGGCCACAGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCa                                                                                                                                                                                                                                        <  2:1122709/191‑1 (MQ=255)                                                                  cacaGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATAc                                                                                                                                                                     >  1:393611/1‑236 (MQ=255)                                                                          gggTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGa                                                                                                                                                              <  1:1118301/235‑1 (MQ=255)                                                                                tcccAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGtt                                                                                                                                                                                                                           <  1:101333/166‑1 (MQ=255)                                                                                  ccAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTcagcgaca                                                                                                                                                                                                                >  2:266116/1‑177 (MQ=255)                                                                                    aGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGa                                                                                                                                                    >  1:452738/1‑235 (MQ=255)                                                                                      ccgccgcgccTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATAc                                                                                                                                                                     <  1:294035/215‑1 (MQ=255)                                                                                           gcgccTCAGCCGGCAAGGTCGGCCCGTCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCccggccgg                                                                                                                                                                           <  2:816337/205‑1 (MQ=255)                                                                                               cTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGCTCGGCAATCCGCGCCTGCAACCCGCCCTCgg                                                                                                                                                                                                                            >  2:66767/1‑151 (MQ=255)                                                                                                   gCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTc                                                                                                                                      <  1:510941/234‑1 (MQ=255)                                                                                                    ccGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTcgc                                                                                                                                    <  1:450044/235‑1 (MQ=255)                                                                                                            gTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGCTGAAGGCCTTGAGCGTCGCGCGCCCtt                                                                                                                            >  1:135906/1‑235 (MQ=255)                                                                                                             tCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTc                                                                                                                           <  1:1021177/235‑1 (MQ=255)                                                                                                              ctgCCCATCGTTCAGCTCACCGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGc                                                                                                                                                                                                    <  2:296503/159‑1 (MQ=255)                                                                                                                gCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCTCTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCccggccgg                                                                                                                                                                           <  1:307268/184‑1 (MQ=255)                                                                                                                  ccATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGt                                                                                                                      <  1:623833/235‑1 (MQ=255)                                                                                                                    aTCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCtt                                                                                                                            <  1:811122/227‑1 (MQ=255)                                                                                                                      cGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCt                                                                                                                  <  1:169399/235‑1 (MQ=255)                                                                                                                        ttCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTcgc                                                                                                                                    <  1:1014072/215‑1 (MQ=255)                                                                                                                        acaggCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCt                                                                                                                  <  1:410303/229‑1 (MQ=255)                                                                                                                         tCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTCCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGaa                                                                                                               <  1:620414/235‑1 (MQ=255)                                                                                                                         tCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGCTCACCCTCCACCTGCACCCAGTCGGTCTTGCCCAGCTCGTGCTTCGGCTCGGCACTCCGCGCCTGCAACCCGCCATCGTTgg                                                                                                                                                                                                                         >  2:80941/1‑129 (MQ=255)                                                                                                                               cAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTG                                                                                                                                                                                                                                          <  2:1020457‑M1/106‑1 (MQ=255)                                                                                                                                aaCGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCa                                                                                                       <  1:506290/236‑1 (MQ=255)                                                                                                                                  cGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCccg                                                                                                                                                                                <  1:945321/161‑1 (MQ=255)                                                                                                                                   gCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGGATACGCCCGGAATGTCGATGAAGTCCtcg                                                                                                                                            >  1:164888/1‑194 (MQ=255)                                                                                                                                         ccGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATg                                                                                                                                                     <  1:281475/180‑1 (MQ=255)                                                                                                                                          cGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCt                                                                                                                  >  2:410302/1‑215 (MQ=255)                                                                                                                                            cAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCCTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGc                                                                                                                                                                                                    <  2:1036916/131‑1 (MQ=255)                                                                                                                                             aaGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGt                                                                                                                      <  1:885984/208‑1 (MQ=255)                                                                                                                                              aGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCCCCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCccg                                                                                                                                                                                <  2:125839/149‑1 (MQ=255)                                                                                                                                               gcgcTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGtt                                                                                        >  1:441378/1‑236 (MQ=255)                                                                                                                                                   tGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTttgt                                                                                     >  1:434809/1‑235 (MQ=255)                                                                                                                                                       aCTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCAc                                                                                                                         <  1:922899/195‑1 (MQ=255)                                                                                                                                                       aCTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCAc                                                                                                                         >  2:922898/1‑195 (MQ=255)                                                                                                                                                           cTCGTCACTCGGTTCCCCCTCCACCTGCTCCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCt                                                                                                                  <  1:312197/198‑1 (MQ=255)                                                                                                                                                              gTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGa                                                                            >  2:745420/1‑233 (MQ=255)                                                                                                                                                                cACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATcag                                                                        >  1:745421‑M2/1‑232 (MQ=255)                                                                                                                                                                   tCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATcaggcgc                                                                    >  1:54225‑M2/1‑229 (MQ=255)                                                                                                                                                                        tCACCCTCCACCCGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGatcctgttcaacaaaccgttcgacgtgctgacccagtt                                                                                                                                                                                                    <  2:1057946‑M1/103‑39 (MQ=255)                                                                                                                                                                          aCCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCCTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTcg                                                                                                                                     <  1:743526/164‑1 (MQ=255)                                                                                                                                                                            ccTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCACCCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATg                                                                                                                                                     <  2:507976/146‑1 (MQ=255)                                                                                                                                                                             cTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATcaggcgcg                                                                   <  2:562785‑M2/227‑9 (MQ=255)                                                                                                                                                                                 aCCTGCACCCAGTAGGTCTGGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGGCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGt                                                                                                                                                          <  2:56845/136‑1 (MQ=255)                                                                                                                                                                                       aCCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGa                                                                                              <  2:330349/190‑1 (MQ=255)                                                                                                                                                                                         ccAGTAGGTCTTGGCCAGCTTGTGCCTCGGATCGGCCATCCGCGCCTGatcctgttcaacaaaccgttcgatgtgc                                                                                                                                                                                                              >  1:189518‑M1/1‑48 (MQ=255)                                                                                                                                                                                           aGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAg                                                                                                      >  1:848281/1‑178 (MQ=255)                                                                                                                                                                                             tAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGatcctgttcaacaaaccgttcgacgtgctgacccagttcagcgacggtgaagggcgcgcgacgctcaaggacttcatcgacattccgggcgtatacccggccgggcggctggacagcgacagc                                                                                                               >  2:982943‑M1/1‑44 (MQ=255)                                                                                                                                                                                             tAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGACCTGGGTCAGCACGTCGAACGGTTCGTTGAACAGGAt                                                                           >  2:943336/1‑203 (MQ=255)                                                                                                                                                                                                   ttGGCCAGCTTGTGCTTCGGATCGGCACTCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCg                                                                                                                                                        <  2:250565/120‑1 (MQ=255)                                                                                                                                                                                                              gtgCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTc                                                               >  2:957093/1‑198 (MQ=255)                                                                                                                                                                                                              gtgCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCGGCGGGTGGCGCCTTGGCCTGGCGACGCGGGCcggcg                          >  1:20189/1‑235 (MQ=255)                                                                                                                                                                                                                  ttCGTATCCGCACTCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCATTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCg                                                                                                                                                        <  2:129448/105‑1 (MQ=255)                                                                                                                                                                                                                        taggCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCGGCGGGTGGCGCCTTGGCCTGGCGACGCGGGCcgg                            <  2:420618/221‑1 (MQ=255)                                                                                                                                                                                                                                ccGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCt                                                                                                                  <  2:73375/129‑1 (MQ=255)                                                                                                                                                                                                                                 cgcgCCTGatcctgttcaacaaaccgttcgacgtgctgacccagttcagcgacggtgaagggcgcgcgacgctcaaggacttcatcgacattccgggcgtatacccggccgggcggctggaccgcgacagcgaaggcttgctgttgctgaccaacgatggcgggttgcaggcgcggattgccgatccgaagcacaagctggccaagacctactgggtgcaggtggag               <  2:562785‑M1/227‑220 (MQ=255)                                                                                                                                                                                                                                  gcgcCTGatcctgttcaacaaaccgttcgacgtgctgacccagttcagcgacggtgaagggcgcgcgacgctcaaggacttcatcgacattccgggcgtatacccggccgggcggctggaccgcgacagcgaaggcttgctgttgctgaccaacgatggcgggttgcaggcgcggattgccgatccgaagcacaagctggccaagacctactgggtgcaggtggagggtgaaccga     >  1:54225‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                  gcgcCTGatcctgttcaacaaaccgttcgacgtgctgacccagttcagcgacggtgaagggcgcgcgacgctcaaggacttcatcgacattccgggcgtatacccgg                                                                                                                                      <  2:1036547‑M1/107‑101 (MQ=255)                                                                                                                                                                                                                                      cTGatcctgttcaacaaaccgttcgacgtgctgacccagttcagcgacggtgaagggcgcgcgacgctcaaggacttcatcgacattccgggcgtatacccggccgggcggctggaccgcgacagcgaaggcttgctgttgctgaccaacgatggcgggttgcaggcgcggattgccgatccgaagcacaagctggccaagacctactgggtgcaggtggagggtgaaccgagtg  >  1:745421‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         GAATCACCAGTTCCAGCCAGCTGGTCGGCACGCTCTTGCGAAACCGTACCGGCGGGTTACGCGGCCACAGCTCGGGTTCTTCCAGGCGCCGCGCCTCAGCCGGCAAGGTCGGCCCATCGTTCAGCTCAACGCCATCACGCAAGCGCTGCAACTGCTCGTCACTCGGTTCACCCTCCACCTGCACCCAGTAGGTCTTGGCCAGCTTGTGCTTCGGATCGGCAATCCGCGCCTGCAACCCGCCATCGTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCGGCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGC  >  AE015451/5438866‑5439329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.