New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6002217	63 (1.020)	8 (0.130)	7/338	NT	11.1%	coding (84/1299 nt)	amaA	L‑pipecolate oxidase
	?	AE015451	= 6002230	66 (1.090)					coding (71/1299 nt)	amaA	L‑pipecolate oxidase

CCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6001984‑6002217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGTCGAGGCCACCCTTGGCC  <  AE015451/6002230‑6002018                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG                                                                                                                                                                                                                       <  2:572363/234‑1                      CTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG                                                                                                                                                                                                                       <  2:931509/213‑1                               TTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG                                                                                                                                                                                                                       <  1:328838/204‑1                                                                  GATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG                                                                                                                                                                                                                       <  1:1094703/169‑1                                                                  GATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG                                                                                                                                                                                                                       >  2:1094702/1‑169                                                                                                                                                                       GGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCACCCACCTGCGCGAA                                                                                                                              >  1:1041370/1‑157                                                                                                                                                                            ATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTACTACCGGCCTGTC                                                                                                                                                    >  1:900302/1‑130                                                                                                                                                                                                 ATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCAGGTGAGCACAAGGCCGATGTCTGTCTGATCGGCGGCGGCATTACCGGCCTGTCGGCGGCCATCCACCg                                                                                                                                     >  2:812920/1‑123                                                                                                                                                                                                          CCGATCACACAGACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGT                   >  2:757486/1‑229                                                                                                                                                                                                          CCGATCACACAGACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCC                             >  2:713282/1‑219                                                                                                                                                                                                                     GACATCGGCCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGTCGAGGCCACCCTTGGCC  <  1:757487/235‑1                                                                                                                                                                                                                             CCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGTCGA                <  1:913687/213‑1                                                                                                                                                                                                                             CCTTGTGCTCACCGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGTCGA                >  2:913686/1‑213                                                                                                                                                                                                                                         CGCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGAT                                  >  1:401041/1‑183                                                                                                                                                                                                                                          GCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATC                                                                                       >  1:388405/1‑129                                                                                                                                                                                                                                          GCCCAGGCCCTGGCCGGTGAGCACAAGGCCGACGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGTCCTGGTCAACGCCGGCACGTGGA                                   >  2:750141/1‑181                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACCGCCGCCGATCACACAGACATCGGCCTTGTGCTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6001984‑6002217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCCAGGCCCTGGCCGGTGAGCACAAGGCCGATGTCTGTGTGATCGGCGGCGGTATTACCGGCCTGTCGGCGGCCATCCACCTGCTCGAACAGGGCAAGTCGGTGATCGTGCTGGAGGCCTGGAAGATCGGCCACGGTGGCTCCGGGCGCAACGTCGGCCTGGTCAACGCCGGCACGTGGATCCGCCCCGACGACGTCGAGGCCACCCTTGGCC  <  AE015451/6002230‑6002018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.