New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	378076 =	81 (1.310)	4 (0.070)	4/318	NT	5.9%	intergenic (+19/+46)	PP_0314/gbcA	conserved protein of unknown function/putative glycine‑betaine dioxygenase subunit
	?	AE015451	378109 =	53 (0.930)					intergenic (+52/+13)	PP_0314/gbcA	conserved protein of unknown function/putative glycine‑betaine dioxygenase subunit

CGGCTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCGGGG  >  AE015451/377876‑378344                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            cGGCTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCgg                                                                                                                                                                                                                                             >  1:867098/1‑234 (MQ=255) cGGCTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           >  1:1087516/1‑236 (MQ=255)    cTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  2:968544/233‑1 (MQ=255)    cTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  2:496892/233‑1 (MQ=255)    cTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  2:1080293/233‑1 (MQ=255)    cTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTAATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCggg                                                                                                                                                                                                                                            >  1:625391/1‑232 (MQ=255)         gggcgGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  1:8581/226‑1 (MQ=255)           gcgGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTta                                                                                                                                                                                                                                 >  1:687942/1‑236 (MQ=255)                      cacCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  1:908603/215‑1 (MQ=255)                      cacCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCt                                                                                                                                                                                                                      <  1:662156/236‑1 (MQ=255)                               ccGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  1:969258/206‑1 (MQ=255)                                          gCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATgg                                                                                                                                                                                                   >  1:897355/1‑235 (MQ=255)                                            cTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCggg                                                                                                                                                                                                                                            >  2:1021875/1‑192 (MQ=255)                                             ggggTTGAGTTGGGGGTGGCCTCATTCGCGACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  2:9837/191‑1 (MQ=255)                                               ggTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCg                                                                                                                                                                                              <  1:1003280/235‑1 (MQ=255)                                                gTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCg                                                                                                                                                                                              <  1:929381/234‑1 (MQ=255)                                                                  tCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGt                                                                                                                                                                                                                                   >  2:898409/1‑179 (MQ=255)                                                                      tCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCa                                                                                                                                                                      <  1:1038865/236‑1 (MQ=255)                                                                        gCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCAc                                                                                                                                                                     <  1:692757/235‑1 (MQ=255)                                                                           acaGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACgcgc                                                                                                                                                                 <  1:539551/236‑1 (MQ=255)                                                                                tttGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCt                                                                                                                                                            <  1:313878/236‑1 (MQ=255)                                                                                 ttGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCggg                                                                                                                                                                                                                                            >  2:265525/1‑155 (MQ=255)                                                                                        cTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCActtct                                                                                                                                                                                                              <  1:1053011/178‑1 (MQ=255)                                                                                        cTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGc                                                                                                                                                                       <  2:739314/217‑1 (MQ=255)                                                                                         ttATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGCAcc                                                                                                                                                       <  2:592300/232‑1 (MQ=255)                                                                                          tATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCgg                                                                                                                                                                                             <  1:440825/193‑1 (MQ=255)                                                                                             gtgtggtgaacttcattgactggtacagcgggcgcgtgctgaacaacctgggggcagagccggcgccatacctgaaagaagtgcaggcgcagtagtaactgatgcacccgccatgcttcggcagcagaccgaagcatggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATg                                                                                                                                                                                                    <  2:716640‑M2/42‑1 (MQ=255)                                                                                                     cGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCa                                                                                                                                                  <  1:1121575/225‑1 (MQ=255)                                                                                                      ggATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCg                                                                                                                                                                                              >  1:924542/1‑180 (MQ=255)                                                                                                      ggATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCg                                                                                                                                                                                              <  2:924541/180‑1 (MQ=255)                                                                                                       gATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTcacc                                                                                                                                      <  2:687941/235‑1 (MQ=255)                                                                                                        aTTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTcaccac                                                                                                                                    <  1:365564/236‑1 (MQ=255)                                                                                                             cAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGcc                                                                                                                                                                                                                       >  2:768950/1‑148 (MQ=255)                                                                                                              aaCGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGc                                                                                                                                                             >  2:1101922/1‑205 (MQ=255)                                                                                                                  tcgtcTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCg                                                                                                                          <  1:510854/236‑1 (MQ=255)                                                                                                                       tGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGcccc                                                                                                                                                                                    <  2:582759/173‑1 (MQ=255)                                                                                                                              gcgtgctgaacaacctgggggcaaagccggcgccatacctgaaagaagtgcaggcgcagtagtaactgatgcaccCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCActt                                                                                                                                                                                                                <  1:11426‑M1/63‑1 (MQ=255)                                                                                                                                    tATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCAcgc                                                                                                                                                                   >  2:775916/1‑177 (MQ=255)                                                                                                                                    tATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACggg                                                                                                        <  1:189046/236‑1 (MQ=255)                                                                                                                                    ggaacaacctgggggcagagccggcgccatacctgaaagaagtgcaggcgcagtcgtaactgatgcacccgccatgcttcggcagcagaccgaagcatggcgGGt                                                                                                                                                                                                                                           <  2:729981‑M2/3‑1 (MQ=255)                                                                                                                                             cAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAAt                                                                                                                                                <  2:826978/187‑1 (MQ=255)                                                                                                                                              aGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCAc                                                                                                                                                                     <  2:757156/165‑1 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           >  2:148381/1‑90 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTg                                                                                                                                                                                                                     <  1:805515/112‑1 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTg                                                                                                                                                                                                                     >  2:805514/1‑112 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTTTGCCCCCAgg                                                                                                                                                                                <  2:811285/149‑1 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCa                                                                                                                                                  >  2:457794/1‑179 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCa                                                                                                                                                  <  1:457795/179‑1 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGtt                                                                                                                                          >  1:760093/1‑187 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGtt                                                                                                                                          <  2:760092/187‑1 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTaa                                                                                                                       >  2:104648/1‑206 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGccc                                                                                                     >  1:804098/1‑224 (MQ=255)                                                                                                                                                   gTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGcc                                                                                         >  1:534917/1‑236 (MQ=255)                                                                                                                                                   cagagccggcgccatacctgaaagaagtgcaggcgcagtagtaactgatgcaccCGCCATGCTTCGGTCTGCTGCCGCAGCATGGCgg                                                                                                                                                                                                                                             <  2:213091‑M1/34‑1 (MQ=255)                                                                                                                                                     ggCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCg                                                                                        >  1:869597/1‑235 (MQ=255)                                                                                                                                                      gCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTactact                                                                                                                                                                                                                            >  1:361968/1‑102 (MQ=255)                                                                                                                                                        ttATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGa                                                                                    >  1:790075/1‑236 (MQ=255)                                                                                                                                                         tATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCt                                                                                                 <  2:902128/222‑1 (MQ=255)                                                                                                                                                         tATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGc                                                                                          <  1:293028/229‑1 (MQ=255)                                                                                                                                                               catacctgaaagaagtgcaggcgcagtagtaactgatgcaccCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTcaccacac                                                                                                                                  <  2:716640‑M1/141‑1 (MQ=255)                                                                                                                                                                tacgtacgGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATc                                                                             <  1:899565/235‑1 (MQ=255)                                                                                                                                                                           aagtgcaggcgcagtagtaactgatgcacccgccatgcttcggcagcagaccgaagcatggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTTTGCCCCCAGGTTGTTCAGCAcgc                                                                                                                                                                   <  1:11426‑M2/75‑1 (MQ=255)                                                                                                                                                                            tACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGct                                                                                                                                                                                           >  1:337771/1‑113 (MQ=255)                                                                                                                                                                              cAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTg                                                                                                <  2:337770/202‑1 (MQ=255)                                                                                                                                                                                gCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCgggg                                                                                                                                                                                                                                           >  2:276346/1‑60 (MQ=255)                                                                                                                                                                                 ccTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGc                                                                                                                                                             >  2:560214/1‑138 (MQ=255)                                                                                                                                                                                 ccTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGt                                                                                                                     >  1:816565/1‑178 (MQ=255)                                                                                                                                                                                 ccTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGt                                                                                              <  1:541969/201‑1 (MQ=255)                                                                                                                                                                                       gaTGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGa                                                     >  1:1081947/1‑236 (MQ=255)                                                                                                                                                                                              tggtgTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCgg                                                                                                                                                                                                                                             >  2:364175/1‑45 (MQ=255)                                                                                                                                                                                              tggtgTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGcc                                                                                         <  1:61768/193‑1 (MQ=255)                                                                                                                                                                                              tggtgTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGAcggcgg                                               <  1:676234/235‑1 (MQ=255)                                                                                                                                                                                                gtgtGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTc                                             <  1:712609/235‑1 (MQ=255)                                                                                                                                                                                                   tgAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGtt                                                                  >  1:617930/1‑211 (MQ=255)                                                                                                                                                                                                      accCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACGACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTtcc                                                                                                                                                                         <  2:729981‑M1/102‑2 (MQ=255)                                                                                                                                                                                                      aaGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCggggg                                                                                                                                                                                                                                          >  1:362614/1‑38 (MQ=255)                                                                                                                                                                                                        ccgccatgctgcggcagcagaccgaagcatggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTg                                                                                                                                                                                        <  2:213091‑M2/54‑1 (MQ=255)                                                                                                                                                                                                         cgccatgcttcggcatcagaccgaagcatggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCgg                                                                                                                                                                                             <  2:325801‑M2/49‑1 (MQ=255)                                                                                                                                                                                                          GCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTtact                                                                                                                                                                                                                               <  1:149464‑M1/47‑1 (MQ=255)                                                                                                                                                                                                            CATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTtg                                   >  2:777313‑M1/1‑233 (MQ=255)                                                                                                                                                                                                             ATGCTTCGGTCTGCTGCCGAAGCATGGCGGGt                                                                                                                                                                                                                                           <  2:138236‑M1/32‑1 (MQ=255)                                                                                                                                                                                                               GCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTtg                                   >  2:720475‑M1/1‑230 (MQ=255)                                                                                                                                                                                                                 TTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGa                                                                                                               >  2:379147‑M1/1‑152 (MQ=255)                                                                                                                                                                                                                 TTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTtg                                   >  1:874382‑M1/1‑228 (MQ=255)                                                                                                                                                                                                                           tgcCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACggg                                                                                                        <  2:477540/149‑1 (MQ=255)                                                                                                                                                                                                                                   catggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGt          <  1:724597‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                                   catggcgGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGt          <  1:39608‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                                        cgGGTGCATCAGTTCCTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGt          <  1:382675‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                                         gGGTGCATCCGTTACTACGGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCggg   <  1:364176‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                         gGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCggg   <  1:340869‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                          ggTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCgggg  <  1:552053/236‑1 (MQ=255)                                                                                                                                                                                                                                          ggTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCgggg  <  1:1105816/236‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            CGGCTACCGCGCGGTTGATTACACCGGAATCCGAGGTGTTGGCCTGGGTTGATTTTGGGGTGGCCTCATTCGCCACAGTTTTGTCAGCTTATGAGCTTTACGGATTGGCAACGTCGTCTGCCGAGCGGCGCTATCCCATACAGCCGGTGGCTTATGAGATACGTACGGGAGTACAGCCTTGAGATGCAGTGGTGTGAAAGCGCCATGCTTCGGTCTGCTGCCGAAGCATGGCGGGTGCATCAGTTACTACTGCGCCTGCACTTCTTTCAGGTATGGCGCCGGCTCTGCCCCCAGGTTGTTCAGCACGCGCCCGCTGTACCAGTCAATGAAGTTCACCACACCAAACTCGTAAGTCTTCGAATACGGGCCCGGCTGGTACGCCGTGGAGTTGATCCCACGCTGGTTCTCTTCGGCCAGACGGCGGTCCTGGTCGTTGGTGGCGTCCCACACCTTGCGCATGTTCTCGGGG  >  AE015451/377876‑378344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.