New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4585388	44 (0.710)	4 (0.070)	4/328	NT	8.5%	coding (196/1986 nt)	glgE	Alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	AE015451	= 4585403	44 (0.750)					coding (181/1986 nt)	glgE	Alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

AGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAGGGCTCGTTTCGTGACATCGACCTTGCTCCC  >  AE015451/4585181‑4585629                                                                                                                                                                                                                               |                                                                                                                                                                                                                                    aGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACcgccaggcccaca                                                                                                                                                                                                                        >  1:737485‑M2/1‑223 (MQ=255)     gCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑c                                                                                                                                                                                                                   <  1:580145/236‑1 (MQ=255)       cttcttCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCg                                                                                                                                                                                                                 <  1:872071/236‑1 (MQ=255)                  tccagttTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTcagcaccaag                                                                                                                                                                                                      <  1:1047696/236‑10 (MQ=255)                    cagttTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑c                                                                                                                                                                                                                   <  1:632733/221‑1 (MQ=255)                                  cGCCGGCGGGGTACTTCTTCTCCGGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑c                                                                                                                                                                                                                   <  2:747665/207‑1 (MQ=255)                                                          gATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCGGTAGGCCTTgg                                                                                                                                                                                                 >  1:348189/1‑201 (MQ=255)                                                            tCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGc                                                                                                                                                                                              <  2:969893/202‑1 (MQ=255)                                                                ggCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGCCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGCTGAGCATCACCGCCAGGCggcc                                                                                                                                                                                                                         >  2:165470/1‑170 (MQ=255)                                                                    aTAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCCGTCGCTGTAGGCCTTGGTg                                                                                                                                                                                               <  2:671048/194‑1 (MQ=255)                                                                           gCAAACGGTTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCt                                                                                                                                                                        <  2:1035494/209‑1 (MQ=255)                                                                               aCGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGt                                                                                                                                                                                                                >  1:76494/1‑165 (MQ=255)                                                                                 gggTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGa                                                                                                                                        <  1:773562/235‑1 (MQ=255)                                                                                  ggTCGATCCAGGCCTCGAGACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGa                                                                                                                                        <  2:480689/234‑1 (MQ=255)                                                                                       aTCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCGGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAgg                                                                                                                                                                                                       <  1:583172/166‑1 (MQ=255)                                                                                                tCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCg                                                                                                                                                                          >  1:168105/1‑186 (MQ=255)                                                                                                tCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGgcggcgga                                                                                                                                                      >  1:119117/1‑204 (MQ=255)                                                                                                          cccGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACgg                                                                                                                                                                                        <  1:154071/161‑1 (MQ=255)                                                                                                            cGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGgcggcg                                                                                                                                                        >  2:1001952/1‑192 (MQ=255)                                                                                                                 cGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCtt                                                                                                                                                                                                   >  2:1084544/1‑144 (MQ=255)                                                                                                                 cGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGa                                                                                                                                        >  2:461471/1‑203 (MQ=255)                                                                                                                      ccAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGGTGAGCATCCCCGCCAGGCGGGCGTGG‑CCGTCGCt                                                                                                                                                                                                            >  2:228745/1‑130 (MQ=255)                                                                                                                            cGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACcgccaggcccacagccggcgctggcattgcgtgccgat                                                                                                                                                                                               <  2:826309‑M2/138‑39 (MQ=255)                                                                                                                            cGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTc                                                                                                                                                                                                               >  1:908742/1‑121 (MQ=255)                                                                                                                            cGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTc                                                                                                                                                                                                               <  2:908741/121‑1 (MQ=255)                                                                                                                             ggTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGgcgc                                                                                                   >  1:663739/1‑228 (MQ=255)                                                                                                                                  gggTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACcgccaggcccacagccggcgctggcattgcgtgccgatgcagtc                                                                                                                                                                                         >  1:826310‑M2/1‑94 (MQ=255)                                                                                                                                             gCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATg                                                                                                           <  2:623623/204‑1 (MQ=255)                                                                                                                                                            ttGCCCGCCGACTGCATCGGCACGCAATGCCGGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACgg                                                                                                                                                                                        <  2:178654/112‑1 (MQ=255)                                                                                                                                                               cccGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCgg                                                                                                                                              >  1:176517/1‑151 (MQ=255)                                                                                                                                                                   ccgACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGa                                                                                                                                        <  2:567624/153‑1 (MQ=255)                                                                                                                                                                   ccgACTGAATCGGCACGCAATGCCAGCGCCGGCGGTGGGCCTGGCGCCAGTTGAGCATCCCCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAgc                                                                                            <  1:85032/197‑1 (MQ=255)                                                                                                                                                                    cgACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCAc                                                                                                               >  2:9411/1‑177 (MQ=255)                                                                                                                                                                            tCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAgg                                                                                <  1:923300/200‑1 (MQ=255)                                                                                                                                                                              ggCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTggg                                                                                     <  1:184428/193‑1 (MQ=255)                                                                                                                                                                                      aTGCCGGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATgg                                              <  1:1001397/224‑1 (MQ=255)                                                                                                                                                                                         ccAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCCCCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGc                                                                                                                                             <  2:323728/126‑1 (MQ=255)                                                                                                                                                                                         ccAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCCCCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAg                                <  1:9411/235‑1 (MQ=255)                                                                                                                                                                                         ccAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTg                                                                                       <  1:657378/180‑1 (MQ=255)                                                                                                                                                                                                cGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTggg                                                                                     <  1:212489/175‑1 (MQ=255)                                                                                                                                                                                                cGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAGGGCTCGtt                        >  1:937252/1‑236 (MQ=255)                                                                                                                                                                                                    tgtgGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGt                                                                                                        >  1:724294/1‑152 (MQ=255)                                                                                                                                                                                                    tgtgGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGt                                                                                                        <  2:724293/152‑1 (MQ=255)                                                                                                                                                                                                     gtgGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCCGGGGCACGCTTTCaaa                                 >  1:269197/1‑222 (MQ=255)                                                                                                                                                                                                        ggCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAGGGCTCGTTTCGTGAc                 <  1:1013756/235‑1 (MQ=255)                                                                                                                                                                                                             ggCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGt                                                                                                        <  1:959499/143‑1 (MQ=255)                                                                                                                                                                                                                gcCAGTTGAGCATCACcgccaggcccacagccggcgctggcattgcg                                                                                                                                                                                                      <  2:314205‑M2/47‑32 (MQ=255)                                                                                                                                                                                                                gcCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAGGGCTCGTTTc                      >  2:399941/1‑222 (MQ=255)                                                                                                                                                                                                                   aGTTGCGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGc                                            <  1:302382/197‑1 (MQ=255)                                                                                                                                                                                                                       gAGCATCACcgccaggcccacagccggcgctggcattgcgtgccgatgcagtcggcgggcaacgacctgtggcaggccgaattcacccccaccgagctgggcccgcaccggttcagtatcgaggcctggatcgacccgtttgccacctattgccacgatctggagaagaagtaccacgccggcgtcgaggtaaaactggaactggaagaaggccgcttgatgctgggcaaaggcat  <  1:988472‑M2/236‑228 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                    AGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGG‑CCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGGCGGCGAAGCTGCCGGCGTCGAGCACGGGTTGGGTGTCTTCGATCACGATGCGTGGCGCCAACAGCGCCTGGGCCAGGCTAATGGCCTGGTCCGGGTGATCGTTCGCCATGGGCACGCTTTCAAAGGGCTCGTTTCGTGACATCGACCTTGCTCCC  >  AE015451/4585181‑4585629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.