New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2055637	46 (0.640)	4 (0.060)	4/332	NT	6.5%	coding (778/1092 nt)	aroC	Chorismate synthase
	?	AE015451	= 2055929	71 (1.050)					coding (1070/1092 nt)	aroC	Chorismate synthase

GATCCGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2055400‑2055637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaccgggGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAATGGCCATCATCGCCTCGGCAATCGGCGTGGCACGGATGCCCACGCACGGGTCGTGGCGGCCTTTGGTGATGACGTCCACCGGGTTGCCATCGACATCGATCGAGCGGCCCGGGGTGGTGATGCTGGAAGTGGGCTTCAGTGCCAGGTGGGCAACGATCGGCTGGCCC  <  AE015451/2055929‑2055702                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATCCGGACCAAGGACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCG                                                                                                                                                                                                                                        <  1:938267/236‑1  ATCCGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCG                                                                                                                                                                                                                                        <  1:487588/235‑1     CGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGc                                                                                                                                                                                                                                     >  1:823052/1‑234                                                                                        GCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTCGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGA                                                                                                                                                                                                                                              >  1:540647/1‑143                                                                                                   GATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAA                                                                                                                                                                         >  2:1219131/1‑201                                                                                                   GATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGAGTGGCCCAGCGCGGCACCGAGCACCGGGGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAA                                                                                                                                                                         <  1:1219136/201‑1                                                                                                                                                                ATGAGCATCAGCGCGGGCAAGGGCGTGGAAACCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAATGGCCATCATCGCCTCGGCAATCGGCGTGGCACGGATGCCCACGCACGGGTCG                                                                                                                    <  2:305834/193‑1                                                                                                                                                                                                                           ggGCGGCAGCGAGAACCGGGGTATTCACTGGCACATCGGCATTCTGCGCACGGGGGCGCAGCAGGTGGTCCATCAACGCAATGGCCATCATCGCCTCGGCAATCGGCGTGGCAC                                                                                                                                        <  2:10168/112‑1                                                                                                                                                                                                                                          CCGGGGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAATGGCCATCATCGCCTCGGCAATCGGCGTGGCACGGATGCCCACGCACGGGTCGTGGCGGCCTTTGGTGATGACGTCCACCGGGTTGCCATCGACATCGATCGAGCGGCCCGGGGTGGTGATGCTGGAAGTGGGCTTCAGTGCCAGGTGGGCAACGATCGGCTGGCCC  >  2:469195/1‑233                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATCCGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2055400‑2055637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaccgggGTATTCACTTGCACATCGGCATTCTGCGCACGGTGGCGCAGCAGGTGGTCCATCAACGCAATGGCCATCATCGCCTCGGCAATCGGCGTGGCACGGATGCCCACGCACGGGTCGTGGCGGCCTTTGGTGATGACGTCCACCGGGTTGCCATCGACATCGATCGAGCGGCCCGGGGTGGTGATGCTGGAAGTGGGCTTCAGTGCCAGGTGGGCAACGATCGGCTGGCCC  <  AE015451/2055929‑2055702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.