New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2055637	46 (0.640)	4 (0.060)	4/332	NT	6.5%	coding (778/1092 nt)	aroC	Chorismate synthase
	?	AE015451	= 2055929	71 (1.050)					coding (1070/1092 nt)	aroC	Chorismate synthase

CGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGC  >  AE015451/2055404‑2055866                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                      cGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGc                                                                                                                                                                                                                                      >  1:823052‑M1/1‑234 (MQ=255) cGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGa                                                                                                                                                                                                                                      >  1:1173153/1‑235 (MQ=255)      aaaGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACt                                                                                                                                                                                                                                >  1:412266/1‑236 (MQ=255)           aCCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGAccc                                                                                                                                                                                                                           <  1:926164/236‑1 (MQ=255)                aGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGa                                                                                                                                                                                                                       <  1:939695/235‑1 (MQ=255)                       ggCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGa                                                                                                                                                                                                                       >  1:919562/1‑228 (MQ=255)                                     aGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAAcgcg                                                                                                                                                                                                 >  1:207887/1‑236 (MQ=255)                                          cgcCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACgcgggcgg                                                                                                                                                                                            >  1:469200/1‑236 (MQ=255)                                          cgcCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACgcgggc                                                                                                                                                                                              >  1:533812/1‑234 (MQ=255)                                               agaCCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCCGCACCGAGCACCGGGACGAACTGACCCCGGACgg                                                                                                                                                                                                                    >  2:531200/1‑207 (MQ=255)                                                   cAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTgg                                                                                                                                                                                    >  1:226998/1‑235 (MQ=255)                                                      gATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCgg                                                                                                                                                                                <  1:1270073/236‑1 (MQ=255)                                                                                               gATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGgtattcacttgcacatcggcattctgcgcacggtggcgcagcaggtggtccatcaacgcaa                                                                                                                                                                          >  2:1219131‑M1/1‑140 (MQ=255)                                                                                               gATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTggg                                                                                                                                                                                   >  2:124706/1‑192 (MQ=255)                                                                                               gATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGAGTGGCCCAGCGCGGCACCGAGCACCGGGgtattcacttgcacatcggcattctgcgcacggtggcgcagcaggtggtccatcaacgcaa                                                                                                                                                                          <  1:1219136‑M1/201‑62 (MQ=255)                                                                                                   cccGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACt                                                                                                                                         >  1:1232435/1‑230 (MQ=255)                                                                                                              cGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAg                                                                                                                                                                                                           >  2:945902/1‑153 (MQ=255)                                                                                                              cGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCa                                                                                                                        <  1:1181010/236‑1 (MQ=255)                                                                                                                              cGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCt                                                                                                                                                                                      <  1:327801/158‑1 (MQ=255)                                                                                                                                   ggATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCtcg                                                                                                    >  1:81695/1‑235 (MQ=255)                                                                                                                                   ggATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCtcg                                                                                                    >  1:657415/1‑235 (MQ=255)                                                                                                                                   ggATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGCCCg                                                                                                        >  1:196780/1‑231 (MQ=255)                                                                                                                                      tGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCa                                                                                                                        <  1:1238709/212‑1 (MQ=255)                                                                                                                                                gCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATgg                                                                                      <  1:665005/236‑1 (MQ=255)                                                                                                                                                 cccATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCtcgat                                                                                                  >  1:247245/1‑223 (MQ=255)                                                                                                                                                         cTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCt                                                                                                                                                                                      <  2:611221/131‑1 (MQ=255)                                                                                                                                                            atgaGCATCAGCGCGGGCAAGGGCGTGGAAACCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGgtattcacttgcacatcggcattctgcgcacggtggcgcagcaggtggtccatcaacgcaatggccatcatcgcctcggcaatcggcgtggcacggatgcccacgcacgggtcg                                                                                                                     <  2:305834‑M1/193‑115 (MQ=255)                                                                                                                                                               aGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAg                                                                                                                                     >  2:230984/1‑174 (MQ=255)                                                                                                                                                               aGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCa                                                                                                                        <  2:1173148/187‑1 (MQ=255)                                                                                                                                                               aGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGCCgc                                                                       >  1:267749/1‑235 (MQ=255)                                                                                                                                                                    cAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGTTTATCTCTGCACTCAGCACCGGTACGAACTGCACACGGCAGGCTTTCTCAGTCCTAACGCGGTCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGcc                                                                                                                                   >  2:164460/1‑171 (MQ=255)                                                                                                                                                                    cAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGtcatca                                                                  >  1:848249/1‑236 (MQ=255)                                                                                                                                                                        gcgGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCa                                                                                                                        <  2:1147556/178‑1 (MQ=255)                                                                                                                                                                            taaaGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGccc                                                                                                                                  <  1:62838/162‑1 (MQ=255)                                                                                                                                                                                         aaTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCcg                                              >  1:518071/1‑235 (MQ=255)                                                                                                                                                                                          aTCGTCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCGTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACt                                                                                                                               <  2:4641/153‑1 (MQ=255)                                                                                                                                                                                           gcGGCGCCGGGTTCGCCAGTGTGGCCCCGCGCGGCACCGAGCACGGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGaa                                                                                                                                      <  2:74375/144‑1 (MQ=255)                                                                                                                                                                                             ggCGCCGGTTGCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCa                                                                                    <  1:151370/193‑1 (MQ=255)                                                                                                                                                                                                      ttCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTACTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGc                                                                                     <  1:352876/183‑1 (MQ=255)                                                                                                                                                                                                                     cAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGGGGGCATCCGTGCCa                           >  1:151165/1‑226 (MQ=255)                                                                                                                                                                                                                       gggcggcAGCGAGAACCGGGgtattcactggcacatcggcattctgcgcacgggggcgcagcaggtggtccatcaacgcaatggccatcatcgcctcggcaatcggcgtggcac                                                                                                                                         <  2:10168‑M1/112‑95 (MQ=255)                                                                                                                                                                                                                        cgcgGCACCGCGCACCGGGACGAACTGACCCCGGAAGGCTGCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTCCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGgccg                                                        <  1:368232/194‑1 (MQ=255)                                                                                                                                                                                                                        cgcgGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCTCCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGCGCCACGCCg                      >  1:418248/1‑228 (MQ=255)                                                                                                                                                                                                                          cgGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAgg            >  1:1259862/1‑236 (MQ=255)                                                                                                                                                                                                                           ggCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCaa                                                              >  1:1174038/1‑185 (MQ=255)                                                                                                                                                                                                                           ggCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCaa                                                              <  2:1174033/185‑1 (MQ=255)                                                                                                                                                                                                                           ggCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGa              >  1:70030/1‑233 (MQ=255)                                                                                                                                                                                                                           ggCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCCAGATGGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGc           >  1:690339/1‑236 (MQ=255)                                                                                                                                                                                                                                     aCCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCa                                                     >  2:499398/1‑184 (MQ=255)                                                                                                                                                                                                                                     aCCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGatgatg    >  2:801712/1‑233 (MQ=255)                                                                                                                                                                                                                                     aCCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGc  >  1:941295/1‑235 (MQ=255)                                                                                                                                                                                                                                     aCCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGGGCGTGGGCATCCGTg                              >  1:47871/1‑207 (MQ=255)                                                                                                                                                                                                                                      ccGGGgtattcacttgcacatcggcattctgcgcacggtggcgcagcaggtggtccatcaacgcaatggccatcatcgcctcggcaatcggcgtggcacggatgcccacgcacgggtcgtggcggcctttggtgatgacgtccaccgggttgccatcgacatcgatcgagcggcccggggtggtgatgctggaagtgggcttcagtgccaggtgggcaacgatcggctggccc   >  2:469195‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                      CGGACAAAGTACCTGAGCTGGAGGCCTACATGGACCAGCTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGATGTCGATGGCAACCCGGTGGACGTCATCACCAAAGGCCGCCACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGC  >  AE015451/2055404‑2055866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.