New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2183822	74 (1.040)	5 (0.070)	5/328	NT	6.6%	intergenic (+53/‑121)	PP_5489/PP_5490	conserved protein of unknown function/site‑specific DNA recombinase
	?	AE015451	= 2183830	72 (1.080)					intergenic (+61/‑113)	PP_5489/PP_5490	conserved protein of unknown function/site‑specific DNA recombinase

GCCACGGTAGCTAAATTACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2183581‑2183822 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcgcataaCTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGATCGAATGGC  <  AE015451/2183830‑2183607                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCACGGTAGCTAAATTACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTC                                                                                                                                                                                                                                        <  1:658490/236‑1    ACGGTAGCTAAATTACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCG                                                                                                                                                                                                                                       <  2:820521/234‑1     CGGTAGCTAAATTACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCG                                                                                                                                                                                                                                       <  2:938394/233‑1              AATGACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCG                                                                                                                                                                                                                                       <  2:158734/224‑1                      GTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCG                                                                                                                                                                                                                                       <  2:732679/216‑1                                                                                                                                      GTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCCATTTTGATCAATTGAATTTGTAGGTGTAGTCAG                                                                                                                                           >  1:74521/1‑196                                                                                                                                              CTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTA                                                                                                                                                >  1:214121/1‑183                                                                                                                                                      CCTGAATATCACTACTGACTACACCTACAAGTTCAATTGATCAAAATTGGGTAGGCGGTACGTCAGGTTGTATGTTTACAAACTGTCG                                                                                                                                                                                                                                       <  2:7337/88‑1                                                                                                                                                         GAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGATTGTATGTTTATAAACTGTCGCATAACTTAAGACTTATGTGACAGTTTGTAAACCTACAACCTTACGTAGCGCATACCCACTTTTGAACAATTTACTTTGTAGCTGTAGTCAGTAGTTATATTCAGGCACTCAtgta                                                                                                                   >  1:736664/1‑197                                                                                                                                                                                      TCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTC                                                                                                                                >  1:1042358/1‑159                                                                                                                                                                                                               GTACGTCAGGTTGTATGTTTACCAACTGTCGCATAACTTAAGACTTATGCGACAGTTTGTATACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGCGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTTACTCAAGGCGAGGGAC                                                                                               >  2:196156/1‑167                                                                                                                                                                                                                                         TGTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGATCGAAT     <  1:1121354/231‑1                                                                                                                                                                                                                                         TGTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGA           <  1:542004/225‑1                                                                                                                                                                                                                                          GTCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGATCGAATGGC  <  2:864061/233‑1                                                                                                                                                                                                                                           TCGCATAACTTAAGACTTATGCGACAGTTTGTAAACATACAACCGGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGATCGAAT     <  2:84277/229‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCACGGTAGCTAAATTACAGGTGTGGCCATTCGATCCGCTAGAGCTGGATGAGGATCAGCTGCGGATTGCGGTCGCAGTTAGTTTCAATGAGTTTGAAGTATTTGATGAGCCGCGGCTGTCGCTCGCCTTGAGTGAGTTGCTTGAGTGCCTGAATATCACTACTGACTACACCTACAAATTCAATTGATCAAAATTGGGTAAGCGGTACGTCAGGTTGTATGTTTACAAACTGTCGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2183581‑2183822 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcgcataaCTTAAGACTTATGCGACAGTTTGTAAACATACAACCTGACGTACCGCTTACCCAATTTTGATCAATTGAATTTGTAGGTGTAGTCAGTAGTGATATTCAGGCACTCAAGCAACTCACTCAAGGCGAGCGACAGCCGCGGCTCATCAAATACTTCAAACTCATTGAAACTAACTGCGACCGCAATCCGCAGCTGATCCTCATCCAGCTCTAGCGGATCGAATGGC  <  AE015451/2183830‑2183607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.