| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 2378115 = | 44 (0.620) | 4 (0.060) | 4/334 | NT | 8.8% | coding (756/999 nt) | cmaX | CmaX protein |
| ? | AE015451 | 2378156 = | 41 (0.600) | coding (797/999 nt) | cmaX | CmaX protein | |||||
AACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2378345‑2378115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGG > AE015451/2378156‑2378343 AACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAG < 1:996945/229‑1AACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAG > 2:996940/1‑229AACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGC < 1:433445/225‑1 ACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCGAGCGG < 1:992187/235‑1 ccGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCGAGCGGATGAACC < 2:1126692/203‑1 GGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGC < 2:1244764/213‑1 CCCGGTGACAAAGCTCATGGGCAGGAATATTCAGGTGATGATGCCAAAGCGGTACATGTTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCT < 1:428197/191‑1 gcACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACC < 2:625211/149‑1 GCGCAGCGAGCGGAGGAACCGCACCATGTACCGCCTTGGCACCATCACCTGCAGCTTCCTGCCCATACGCTTTGTCACCTGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCC > 2:480671/1‑126 CAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGG > 1:276070/1‑193 AACCGCCGGAACAGCCACCACTGCCCCACGGCCAACCCCAGCACGACGATGCAGGCGAACAGGAAGCCCAAAGGGTTTTCCGCCCCGGGGATGCCGCCGACATTGATGCCCAGCAGCCCGGTGACAAAGCTCATGGGCAGGAAGATGCAGGTGATGATGCCAAAGCGGTACATGGTGCGGTTCATCCGCTCGCTGCGCCGCCGGTCCTCGCTTTCCAGCACCAGCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2378345‑2378115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGG > AE015451/2378156‑2378343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |