New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2378115 =	44 (0.620)	4 (0.060)	4/334	NT	8.8%	coding (756/999 nt)	cmaX	CmaX protein
	?	AE015451	2378156 =	41 (0.600)					coding (797/999 nt)	cmaX	CmaX protein

GGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGTTGC  >  AE015451/2377926‑2378347                                                                                                                                                                                                                                       |                                                                                                                                                                                                accgccggaacagccaccactgccccacggccaaccccagcacgacgatgcaggcgaacaggaagcccaaagggttttccgccccggggatgccgccgacattgatgcccagcagcccggtgacaaagctcatgggcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctcgctgcgccgccggtcctcgctttccagcaccagcgcagcgAGCgg                                                                                                                                                                                             <  1:992187‑M2/5‑1 (MQ=255)     aGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGa                                                                                                                                                                                         <  1:598064/235‑1 (MQ=255)     aGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGa                                                                                                                                                                                         >  1:530668/1‑235 (MQ=255)      gCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGaa                                                                                                                                                                                        <  1:624113/235‑1 (MQ=255)        cTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAAcc                                                                                                                                                                                      <  1:622862/235‑1 (MQ=255)        cTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCCGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAAcc                                                                                                                                                                                      <  1:60588/235‑1 (MQ=255)           cagcagATCCGCCGCCGGGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAAcc                                                                                                                                                                                      <  2:740122/232‑1 (MQ=255)               agagcagccgccgTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTCCGCGCAGTTGGCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCAt                                                                                                                                                                               <  1:139305/229‑1 (MQ=255)               agATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCAt                                                                                                                                                                               <  1:656108/235‑1 (MQ=255)                    cgccgccgTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCg                                                                                                                                                                         >  1:816326/1‑236 (MQ=255)                    cgccgccgTGCCGCGGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCagcgagcg                                                                                                                                                                                              <  1:1244654/215‑1 (MQ=255)                       cgccgTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCt                                                                                                                                                                       <  1:652640/235‑1 (MQ=255)                            tGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGca                                                                                                                                                                 <  1:656278/236‑1 (MQ=255)                                    gCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCAcc                                                                                                                                                         <  1:1082926/236‑1 (MQ=255)                                      ttGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTg                                                                                                                                                       >  1:858968/1‑236 (MQ=255)                                      ccgcacgacgatgcaggcgaacaggaagcccaaagggttttccgccccggggatgccgccgacattgatgcccagcagcccggtgacaaagctcatgggcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctcgctgcgccgccggtcctcgctttccagcaccagcgcagcgAGCGGATGAAcc                                                                                                                                                                                      <  2:1126692‑M2/12‑1 (MQ=255)                                       tGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGAt                                                                                                                                                                                           <  1:58971/199‑1 (MQ=255)                                        gcgcCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCa                                                                                                                                                     <  1:1010758/236‑1 (MQ=255)                                             gcTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCACCAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCt                                                                                                                                                  <  1:97077/234‑1 (MQ=255)                                                 tctcGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGcatcat                                                                                                                                                             <  2:1263111/219‑1 (MQ=255)                                                 tctcGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGcatcat                                                                                                                                                             >  1:1263116/1‑219 (MQ=255)                                                     gCCCCGCAACGGGAAAGCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCagcgagcg                                                                                                                                                                                              <  1:267055/182‑1 (MQ=255)                                                             ccGGGAAATCTACGCGCAGTTGCCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGCCGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCGCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGAt                                                                                                                                                                                           <  2:362518/176‑1 (MQ=255)                                                                        gggttttccgccccggggatgccgccgacattgatgcccagcagcccggtgacaaagctcatgggcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctcgctgcgccgccggtcctcgctttccagcaccagcgcagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGc                                                                                                                                            <  2:1244764‑M2/54‑1 (MQ=255)                                                                              cgTTGTCGCGCAGCAAATGGAGCTGCTTCGCCAAGGCCGACGCCGATTACGGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGcatcat                                                                                                                                                             <  2:311041/189‑1 (MQ=255)                                                                                            aaaTGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGGTCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCAcc                                                                                                                                                         <  2:338571/180‑1 (MQ=255)                                                                                             aaTGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCa                                                                                                                                         >  2:430940/1‑195 (MQ=255)                                                                                                        ttCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATgc                                                                                                                                      >  2:654530/1‑186 (MQ=255)                                                                                                               aTGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAAc                                                                              <  1:174868/236‑1 (MQ=255)                                                                                                                  agcccggtgacaaagctcatgggcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCAACATGTACCGCTTTGGCATCATCACCTGAATATTCCTGCCCATGAGCTTTGTCACCggg                                                                                                                        <  1:428197‑M1/115‑1 (MQ=255)                                                                                                                    cccggtgacaaagctcatgggcaggaatattcaggtgatgatgccaaagcggtacatgttgcggttcatccgctcgctgcgccgccggtcctcgctttccagcaccagcgcagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGgct                                                                                                                      <  1:428197‑M2/76‑1 (MQ=255)                                                                                                                         gcacaaagctcatgggcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctcgctgcgccgccggtcctcgctttccagcaccagcgcagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCAcc                                                                                                                                                         <  2:625211‑M2/41‑1 (MQ=255)                                                                                                                                        gcaggaagatgcaggtgatgatgccaaagcggtacatggtgcggttcatccgctCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAAccc                                                                            <  2:1244764‑M1/159‑1 (MQ=255)                                                                                                                                        aCTCAACAACAGCCTGCTCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCa                                                     <  1:281086/236‑1 (MQ=255)                                                                                                                                        aCTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGc                                                      >  1:232656/1‑235 (MQ=255)                                                                                                                                                    ccTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATc                                                                                                                                                   >  2:614056/1‑130 (MQ=255)                                                                                                                                                    ccTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATc                                                                                                                                                   <  1:614061/130‑1 (MQ=255)                                                                                                                                                     ggtgatgatgccaaagcggtacatggtgcggttcatccgctCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTtgtgc                                                                                                                             <  2:625211‑M1/110‑3 (MQ=255)                                                                                                                                                           cGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCCTGAGCTTTGTCACCTGGCTGCTGGGCATCAATCTcggcgt                                                                                                 >  1:154614/1‑172 (MQ=255)                                                                                                                                                                ccTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTg                              <  1:80504/235‑1 (MQ=255)                                                                                                                                                                 cTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTg                              <  1:430945/234‑1 (MQ=255)                                                                                                                                                                                 tGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTg                              <  2:232653/218‑1 (MQ=255)                                                                                                                                                                                  ggttcatccgctCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGtgcgg                                          <  2:1126692‑M1/193‑3 (MQ=255)                                                                                                                                                                                      cgcgAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTg               >  1:332346/1‑228 (MQ=255)                                                                                                                                                                                       gcgAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCAt                                                                                                                                                                               <  1:316121/67‑1 (MQ=255)                                                                                                                                                                                         gAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGtt    <  1:183209/236‑1 (MQ=255)                                                                                                                                                                                         ccgctCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGt     <  1:992187‑M1/230‑1 (MQ=255)                                                                                                                                                                                           aCGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGGGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCt                                                                <  1:834986/174‑1 (MQ=255)                                                                                                                                                                                           aCGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCTTCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGTTGc  <  1:771571/236‑1 (MQ=255)                                                                                                                                                                                           aCGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGTTGc  <  1:85570/236‑1 (MQ=255)                                                                                                                                                                                           aCGCGCGGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGtt    <  1:281737/234‑1 (MQ=255)                                                                                                                                                                                                CTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGtt    <  1:996945‑M1/229‑1 (MQ=255)                                                                                                                                                                                                CTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGtt    >  2:996940‑M1/1‑229 (MQ=255)                                                                                                                                                                                                    GCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGtt    <  1:433445‑M1/225‑1 (MQ=255)                                                                                                                                                                                                      tgGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGtggtgg                  >  2:353069/1‑209 (MQ=255)                                                                                                                                                                                                           cTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAgt                       >  2:317908/1‑199 (MQ=255)                                                                                                                                                                                                                               gcgcagcgAGCGGAGGAACCGCACCATGTACCGCCTTGGCACCATCACCTGCAGCTTCCTGCCCATACGCTTTGTCACCTGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAAccc                                                                            >  2:480671‑M2/9‑126 (MQ=255)                                                                                                                                                                                                                                  cagcgAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCcggcgg      >  1:276070‑M2/6‑193 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                GGGCAGCCTGCAGCAGATCCGCCGCCGTGCCGCTGGCTTGCGCCGCTTTCTCGCCCCGCAACGGGAAATCTACGCGCAGTTGTCGCGCAGCAAATGGAGCTGGTTCGCCAATGCCGACGCCGATTACTGGAATGAACTCAACAACAGCCTGATCCGCTACCTCGAAGAGCTGGAACTGGCCCGCGAACGCGCTGCGCTGGTGCTGGAAAGCGAGGACCGGCGGCGCAGCGAGCGGATGAACCGCACCATGTACCGCTTTGGCATCATCACCTGCATCTTCCTGCCCATGAGCTTTGTCACCGGGCTGCTGGGCATCAATGTCGGCGGCATCCCCGGGGCGGAAAACCCTTTGGGCTTCCTGTTCGCCTGCATCGTCGTGCTGGGGTTGGCCGTGGGGCAGTGGTGGCTGTTCCGGCGGTTGC  >  AE015451/2377926‑2378347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.