New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3475322 =	43 (0.600)	4 (0.060)	4/332	NT	8.9%	coding (1391/2517 nt)	PP_3087	putative excinuclease ABC subunit A
	?	AE015451	3475368 =	41 (0.610)					coding (1345/2517 nt)	PP_3087	putative excinuclease ABC subunit A

CTGTTTGGGGTGGTTTACGTACTCGACGAGCCGTCGGCCGGCTTGCACCCGGCCGACAGTGAAGCGCTGTTCGAAGCCCTGCAGCGCCTGAAACAGGCTGGCAACTCGGTGTACGTGGTGGAGCATGACCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCTCTACAGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3475536‑3475322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgggccCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCT  >  AE015451/3475368‑3475602                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGTTTGGGGTGGTTTACGTACTCGACGAGCCGTCGGCCGGCTTGCACCCGGCCGACAGTGAAGCGCTGTTCGAAGCCCTGCAGCGCCTGAAACAGGCTGGCAACTCGGTGTACGTGGTGGAGCATGACCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCTCTACAGCGGGCCCTACATCCACCAGCCAGTCG                                                                                                                                                                                                                         <  1:1180566/235‑1                                                                    TGTTCGAAGCCCTGCAGCGCCTGAAACAGGCTGGCAACTCGGTGTACGTGGTGGAGCATGACCTGGACACCATGCGCCGCGCCGCCTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCTCTACA                                                                                                                                                                                                                                                    <  1:328673/141‑1                                                                                 GCAGCGCCTGAAACAGGCTGGCAACTCGGTGTACGTGGTGGAGCATGACCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCGCTACAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGT                                                                                                                                                                                                           <  1:522947/169‑1                                                                                                         CTCGGTGTACGTGGTGGAGCATGCCCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCTCTACAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCAT                                                                                                                                                                                                              <  1:362477/142‑1                                                                                                                                 CCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGGAGGGCCGGCTGCCGGCGAACACGGCGGCACCATCCTCTACAG                                                                                                                                                                                                                                                   >  2:997870/1‑81                                                                                                                                                                          GGCCCGCTGCCGGCGAACACGGCGGCGCCATCCTCTACAGCGGGCCCTACAGCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTC                                                                                                                                            <  1:1130299/143‑1                                                                                                                                                                                                                  CGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGG                                     <  2:893093/206‑1                                                                                                                                                                                                                   GGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGA                 >  1:304765/1‑225                                                                                                                                                                                                                       CCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCT  >  1:940384/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGTTTGGGGTGGTTTACGTACTCGACGAGCCGTCGGCCGGCTTGCACCCGGCCGACAGTGAAGCGCTGTTCGAAGCCCTGCAGCGCCTGAAACAGGCTGGCAACTCGGTGTACGTGGTGGAGCATGACCTGGACACCATGCGCCGCGCCGACTGGCTGGTGGATGTAGGGCCCGCTGCCGGCGAACACGGCGGCACCATCCTCTACAGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3475536‑3475322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgggccCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCACCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCT  >  AE015451/3475368‑3475602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.