New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4282722	46 (0.640)	5 (0.070)	4/332	NT	9.9%	coding (508/1089 nt)	PP_3753	Transcriptional regulator, AraC family
	?	AE015451	= 4282759	47 (0.690)					coding (471/1089 nt)	PP_3753	Transcriptional regulator, AraC family

AGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4282586‑4282722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgggcgGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGAACGGGCTGGTGGCTGAG  <  AE015451/4282759‑4282525                                                                                                                                                                                                                                                                                                                                                                                      AGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGCGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCCGGCGGCG                                                                                                                                                                                                                                          >  2:270295/1‑140           TCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGG                                                                                                                                                                                                                                               >  2:610178/1‑125           TCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGG                                                                                                                                                                                                                                               <  1:610183/125‑1                                                                     CTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCGGCGGTGGGGGgc                                                                                                                                                                  >  2:1007753/1‑142                                                                                            GCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGT                                                                                                                            >  1:761645/1‑159                                                                                                  CCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGCGCTCGCGGGGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGAC                                                                                                                                           >  1:644029/1‑138                                                                                                       CCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGG                                                                                                                                                                                                                                            >  1:1006831/1‑36                                                                                                                       CGTCCTCCTGGGCCGGGCGGCGGATTGCCGTCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCG                                                                                                                                              >  2:976892/1‑114                                                                                                                       CGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAGGACCTTTCTGCGCAGTGCACCCCAAGGGCTGGTGATCCGCTTTCGCAATCAG                    >  1:14159/1‑236                                                                                                                                   CCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGTACGACTTGCTGCTGTTGGGGCCGGACCTGCGGCTGGGCAGCG                                                                                                                                              >  1:320380/1‑102                                                                                                                                      GGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGCCAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTG                                                       >  1:322360/1‑186                                                                                                                                      GGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGAACGGGCTGGTGGCT     >  1:684109/1‑236                                                                                                                                      GGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGAACGGGCTGGTGG       >  1:13896/1‑234                                                                                                                                      GGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACCTGCTGCTGTGGGGGCCGGACCTGCGGCGGGGCAG                                                                                                                                                >  2:381823/1‑97                                                                                                                                         GGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGCACGGGCTGGTG        >  2:874066/1‑230                                                                                                                                         GGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGAACGGGCTGGTGGCTGAG  >  1:444205/1‑236                                                                                                                                         GGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGAGCAGGATCGGGCAGACCTGTAGACCTTTCTGCGCAGTGCAGCTCAAGGGCTGGTGATCCGCTTTCGCAA                        >  2:710341/1‑214                                                                                                                                         GGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGGGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTG                                                                                               >  2:670014/1‑143                                                                                                                                                                                                                                                                                                                                                                                      AGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4282586‑4282722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgggcgGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAGGATCGGGCAGCCCTGAAGACCTTTCTGCGCAGTGCACCTCAAGGGCTGGTGATCCGCTTTCGCAATCAGAACGGGCTGGTGGCTGAG  <  AE015451/4282759‑4282525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.