New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4282722	46 (0.640)	5 (0.070)	4/332	NT	9.9%	coding (508/1089 nt)	PP_3753	Transcriptional regulator, AraC family
	?	AE015451	= 4282759	47 (0.690)					coding (471/1089 nt)	PP_3753	Transcriptional regulator, AraC family

CTCAGCCACCAGCCCGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAGGATCAACCCCCGGCAGATCAGGGCAAAA  >  AE015451/4282525‑4282993                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           cTCAGCCACCAGCCCGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCc                                                                                                                                                                                                                                           >  1:444205‑M2/1‑235 (MQ=255)    aGCCACCAGCCCGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcc                                                                                                                                                                                                                                        >  1:684109‑M2/1‑232 (MQ=255)      ccaccaGCCCGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcc                                                                                                                                                                                                                                        >  1:13896‑M2/1‑230 (MQ=255)       caccaGCCCGTGCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCc                                                                                                                                                                                                                                           >  2:874066‑M2/1‑229 (MQ=255)              ccGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATccgc                                                                                                                                                                                                                                            >  2:1096877/1‑222 (MQ=255)                 ttCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCcagccagc                                                                                                                                                                                                                            <  2:898038/235‑1 (MQ=255)                   cTGATTGCGAAAGCGGATCACCAGCCCTTGGGGTGCACTGCGCAGAAAGGTCCTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcccggcccaggaggacg                                                                                                                                                                                                                         >  1:14159‑M2/1‑217 (MQ=255)                       ttGCGAAAGCGGATCACCAGCCCTTGAGCTGCACTGCGCAGAAAGGTCTACAGGTCTGCCCGATCCTGCTCCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCc                                                                                                                                                                                                                                           >  2:710341‑M2/1‑213 (MQ=255)                                           cccTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCcagcaca                                                                                                                                                                                                                         <  1:423316/212‑1 (MQ=255)                                                gAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCagcta                                                                                                                                                                                                >  1:476539/1‑232 (MQ=255)                                                  ggTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTc                                                                                                                                                                                          >  1:549388/1‑236 (MQ=255)                                                      cACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGGCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcc                                                                                                                                                                                                                                        >  1:322360‑M2/1‑182 (MQ=255)                                                        cTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGcc                                                                                                                                                                                                                  >  2:630447/1‑206 (MQ=255)                                                         tGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCa                                                                                                                                                                                   >  1:611000/1‑236 (MQ=255)                                                              aGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGccagccag                                                                                                                                                                                                                             >  2:580078/1‑189 (MQ=255)                                                              aGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCcagcac                                                                                                                                                                                                                          >  1:559419/1‑192 (MQ=255)                                                              aGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGCTTTcc                                                                                                                                                                                         >  1:868212/1‑225 (MQ=255)                                                                    gTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAg                                                                                                                                                                                                         <  1:177038/203‑1 (MQ=255)                                                                                    gATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATg                                                                                                                                                        >  1:527674/1‑236 (MQ=255)                                                                                      tCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGtt                                                                                                                                                      <  1:653126/236‑1 (MQ=255)                                                                                         tGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGttt                                                                                                                                                                                           <  2:465061/196‑1 (MQ=255)                                                                                            accaccGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACt                                                                                                                                                 <  1:767758/235‑1 (MQ=255)                                                                                              caccGGCAGGCGCAGGTAGGCGCTGTCGAACTCCCCCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCc                                                                                                                                                                                                                                           >  2:670014‑M2/1‑142 (MQ=255)                                                                                                    cAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCt                                                                                                                                          >  2:1085841/1‑234 (MQ=255)                                                                                                         gcAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCa                                                                                                                                                                      <  2:872619/201‑1 (MQ=255)                                                                                                             gTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCg                                                                                                                                                    >  2:1048917/1‑215 (MQ=255)                                                                                                                 gcgcTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCG‑‑‑GATTGCCATCGACCGCACGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGc                                                                                                       <  1:270299/235‑1 (MQ=255)                                                                                                                           aCTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcccggcccaggaggacgacttgctgctgtgggggccggacctgc                                                                                                                                                                                              >  1:761645‑M2/1‑113 (MQ=255)                                                                                                                                    cGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCCGGCAGGTTTCCTCGGCCTa                                                                                                                                                                                 >  2:368904/1‑163 (MQ=255)                                                                                                                                         cGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCa                                                                                                                                                           >  2:910587/1‑180 (MQ=255)                                                                                                                                          gTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACCCCGCGAGCGCCGTGCGGTCGATGGCAATCCGCcgcccggcccaggaggacgacttgctgctgtgggggccgg                                                                                                                                                                                                    >  1:644029‑M2/1‑98 (MQ=255)                                                                                                                                            ccGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGCCACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGAtaa                                                                                                                                     >  1:790227/1‑197 (MQ=255)                                                                                                                                            ccGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCg                                                                                                                                                                           >  2:209599/1‑161 (MQ=255)                                                                                                                                             cGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCAccgcccgcc                                                                                                                            <  1:429874/207‑1 (MQ=255)                                                                                                                                             cGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGACGGCAATCCGCcgcccggcccaggaggacg                                                                                                                                                                                                                         >  2:976892‑M2/1‑95 (MQ=255)                                                                                                                                             cGCTGCCCAGCCGCAGGTCCGGCCCCAACAGCAGCAAGTCGTACTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcccgg                                                                                                                                                                                                                                     >  1:320380‑M2/1‑95 (MQ=255)                                                                                                                                               cTGCCCCGCCGCAGGTCCGGCCCCCACAGCAGCAGGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcc                                                                                                                                                                                                                                        >  2:381823‑M2/1‑93 (MQ=255)                                                                                                                                                    cAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGAc                                                                                                                                                  >  2:766855/1‑178 (MQ=255)                                                                                                                                                    cAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGAc                                                                                                                                                  <  1:766860/178‑1 (MQ=255)                                                                                                                                                    cAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGCAGGTTTCCTCGGCATAGACCCgg                                                                                                                                                                          >  2:202772/1‑154 (MQ=255)                                                                                                                                                         gCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTGCCTCgg                                                                                                                                                                                     >  2:894466/1‑138 (MQ=255)                                                                                                                                                                 gccccccacCGCCGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCcgcccggcccaggaggacgacttgctgctgtgggggccggacctgcggctgggcagcggacgcaccgag                                                                                                                                                                       >  2:1007753‑M2/3‑75 (MQ=255)                                                                                                                                                                    ccccACAGCAGCCAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGc                                                                         <  1:49023/235‑1 (MQ=255)                                                                                                                                                                    ccccACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGCCACCGCGAGCTCCGTGCGGTCGACGGCAACCCGCCGCCCGGCCACCCAGCACAGCATGCCGATCATCAGCCCCAGGTCGGTCTCCTCGGCATAGACCCGGGTCAAgcg                                                                                                                                                                  >  2:421567/1‑144 (MQ=255)                                                                                                                                                                          agcagcAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGCCTGCACGCTGATCAccgcacgcccg                                                                                                                          >  2:277431/1‑180 (MQ=255)                                                                                                                                                                                    cgtcCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGcccccc                                                                    >  1:946865/1‑224 (MQ=255)                                                                                                                                                                                         tcctGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAg                                                                                                            >  1:521992/1‑179 (MQ=255)                                                                                                                                                                                         tcctGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGc                                                   >  1:1149979/1‑236 (MQ=255)                                                                                                                                                                                         tcctGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGCAGGTTTCCTCGGCATAGACCCGCGt                                                                                                                                                                        >  2:308086/1‑119 (MQ=255)                                                                                                                                                                                                   ggCGCGACACCGCGAGCTCCGTTCGGGCGACGGCACTTCCGCGCCCTgccatccc                                                                                                                                                                                                                              >  2:766314/1‑54 (MQ=255)                                                                                                                                                                                                   ggCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAAt                                                                                                                                                         <  1:1208914/124‑1 (MQ=255)                                                                                                                                                                                                   ggCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTc                                             >  2:628033/1‑232 (MQ=255)                                                                                                                                                                                                      gcgACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCAt                                                                  >  2:1146500/1‑208 (MQ=255)                                                                                                                                                                                                      gcgACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGtt                                       >  1:980026/1‑235 (MQ=255)                                                                                                                                                                                                      gcgACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGtt                                       >  1:941212/1‑235 (MQ=255)                                                                                                                                                                                                        gACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTgg                                                           >  2:1013379/1‑213 (MQ=255)                                                                                                                                                                                                             cgcgcgCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACcgcccgcccgcc                                                                                                                        <  2:85566/147‑1 (MQ=255)                                                                                                                                                                                                                  gCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAgg                             >  2:600209/1‑233 (MQ=255)                                                                                                                                                                                                                   cTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAGGATCa                         <  1:545789/236‑1 (MQ=255)                                                                                                                                                                                                                       gTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCCCGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCCTGCCCTgg                                                           >  2:1279148/1‑198 (MQ=255)                                                                                                                                                                                                                         gCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCtt                                                >  2:450687/1‑207 (MQ=255)                                                                                                                                                                                                                         gCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCtt                                                <  1:450692/207‑1 (MQ=255)                                                                                                                                                                                                                                aTGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTAcc                                                                                                                 <  2:527669/135‑1 (MQ=255)                                                                                                                                                                                                                                       tCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAGGATCAACCCCCGGCAGATCAggaca     <  1:1237767/236‑4 (MQ=255)                                                                                                                                                                                                                                         cgccgccgggcccaggaggacgacttgctgctgtgggggccggacctgcggctgggcagcggacgcgccgaggtggagttcgacagcgcctacctgcgcctgccggtggtgcaggatcgggcagccctgaagacctttct                                                                                                   >  2:270295‑M2/1‑3 (MQ=255)                                                                                                                                                                                                                                          gccgccCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAGGATCAACCCCCGGCAGATCAGGGCaaaa  >  1:322585/1‑236 (MQ=255)                                                                                                                                                                                                                                           ccgcccggcccaggaggacgacttgctgctgtgggg                                                                                                                                                                                                         >  1:1006831‑M2/1‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           CTCAGCCACCAGCCCGTTCTGATTGCGAAAGCGGATCACCAGCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACAGCATGCCGATCATCAGCACCAGGTAGGTTTCCTCGGCATAGACCCGGGTCAAGGGGTCGGCAATGTTCGACTGCACGCTGATCACCGCCCGCCCGCCACGTACCGTCAGGCTGCCACGCAGGTCACGCAGGAACAGGCCGAAGCCCCCCATGCACTGGCGCAAGGCCTTTTCCAGGTTCGGCTCGAGGATCAACCCCCGGCAGATCAGGGCAAAA  >  AE015451/4282525‑4282993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.