New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5128868 =	84 (1.180)	5 (0.070)	5/342	NT	5.8%	coding (237/438 nt)	PP_4515	Transcriptional regulator, MarR family
	?	AE015451	5128906 =	79 (1.130)					coding (199/438 nt)	PP_4515	Transcriptional regulator, MarR family

CAGGCGCGCTGGCTGGTGTTGCTGCACCTGGCCCGCTTCGAAGAAGCCCCGACACAGCGTGAGCTGGCCCAGAGCGTAGGCGTCGAAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5128999‑5128868 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGT  >  AE015451/5128906‑5129094                                                                                                                                                                                                                                                                                                                                   CAGGCGCGCTGGCTGGTGTTGCTGCACCTGGCCCGCTTCGAAGAAGCCCCGACACAGCGTGAGCTGGCCCAGAGCGTAGGCGTCGAAGGCCCGACCCTGGCGCGTCTGCTCGCCAGCCTGGAAGCGCAAGGG                                                                                                                                                                                               >  2:19968/1‑132                             gGGCCCGCTGCGAAGAAGCGCCGACGCAGCGTGAGCTGGCCCAGAGCGTAGGCGTCGAAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGG                                                                                                                                                                                               <  2:371751/103‑1                                      TCGAAGAAGCCCCGACACAGCGTGAGCTGGCCCAGAGCGTAGGCGTCGAAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCCGTG                                                                                                                                                     >  2:1016963/1‑137                                                                                   TCGAAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGGTCGGGCCTTCGACGCCTACGCTCT                                                                                                                                                                       <  1:716286/74‑1                                                                                      AAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGG                                                                                               >  2:195920/1‑143                                                                                                       CGTCTGCTCGACAGCCTGGAAGCGCAAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGCAGCGGGCCAGGGGCAGCCACACCAGCCAGCCCGCCTGG                                                                                                >  2:391293/1‑125                                                                                                               CGACAGCCTGGAAGCGCAAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGGTGCATGCCAAAGCGGTGTTGGTTGTCGT  >  1:211636/1‑211                                                                                                                                                                                                                                                                                                                                   CAGGCGCGCTGGCTGGTGTTGCTGCACCTGGCCCGCTTCGAAGAAGCCCCGACACAGCGTGAGCTGGCCCAGAGCGTAGGCGTCGAAGGCCCGACCCTGGCGCGTCTGCTCGACAGCCTGGAAGCGCAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5128999‑5128868 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACACCAGCCAGCGCGCCTGGGACAGGTTGAGCCCGGCCAGGCGGCGGTCCAGCTCGGCACGCCAACCTCGGGACATCTGGGCCAGTTGCATGCCAAAGCGGTGTTGGTTGTCGT  >  AE015451/5128906‑5129094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.