New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 147220	27 (0.660)	3 (0.080)	3/320	NT	11.0%	coding (978/1230 nt)	PP_0138	conserved membrane protein of unknown function
	?	AE015451	= 147242	23 (0.590)					coding (1000/1230 nt)	PP_0138	conserved membrane protein of unknown function

GGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/147012‑147220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgctgCGCTGCCAGAGAACGGCTTGACCAGC  <  AE015451/147242‑147217                                                                                                                                                                                                                                             GGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGCGCTGCCAG                   <  1:21363/218‑1                                                                          ccgGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACC                                  <  2:179910/127‑1                                                                                                                         CCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGCGCTGCCAGAGAACGGCTTGACCAGC  >  1:550103/1‑115                                                                                                                         CCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGCGCTGCCAGAGAACGGCTTGACCAGC  <  2:550102/115‑1                                                                                                                                                                                                                                             GGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/147012‑147220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgctgCGCTGCCAGAGAACGGCTTGACCAGC  <  AE015451/147242‑147217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.