New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 147220	27 (0.660)	3 (0.080)	3/320	NT	11.0%	coding (978/1230 nt)	PP_0138	conserved membrane protein of unknown function
	?	AE015451	= 147242	23 (0.590)					coding (1000/1230 nt)	PP_0138	conserved membrane protein of unknown function

GCCCTGAAACGGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGCCGAGTTTTCAGGGGTAGTCGCGGCGATC  >  AE015451/147002‑147445                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  gcCCTGAAACGGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGtt                                                                                                                                                                                                                        >  1:701341/1‑230 (MQ=255) gcCCTGAAACGGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTg                                                                                                                                                                                                                   >  1:489983/1‑235 (MQ=255)           gggTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGcgctgccag                                                                                                                                                                                                                          <  1:21363‑M1/218‑10 (MQ=255)                    tgtATGAAGCGTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCa                                                                                                                                                                                                                               <  1:310515/204‑1 (MQ=255)                                ttGTGGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCgag                                                                                                                                                                                      >  2:501780/1‑233 (MQ=255)                                                 gAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGc                                                                                                                                                                    <  1:310335/234‑1 (MQ=255)                                                     gCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGa                                                                                                                                                               <  1:501781/235‑1 (MQ=255)                                                            tgtgGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACCCGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCg                                                                                                                                                                                                                          >  2:26880/1‑169 (MQ=255)                                                                   aaGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTg                                                                                                                                                                                                                   >  2:559545/1‑169 (MQ=255)                                                                                                 cgggtggCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTtctc                                                                                                                                                                                                                     <  2:196289/135‑1 (MQ=255)                                                                                                       gCGGTGGGTGTGCTTCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCg                                                                                                                                                                   <  1:159959/181‑1 (MQ=255)                                                                                                            gggtgTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCCGCGACGATTc                                                                                                                               >  1:371199/1‑212 (MQ=255)                                                                                                                      cgcgcCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAac                                                                                                               >  1:719110/1‑218 (MQ=255)                                                                                                                            tctGGTGCCCTGGAGCTGGCCCTGGACTGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTGAAGCCGTTCTCTGGCAGCGCAGCGCGGGCa                                                                                                                                                                                                  <  2:590381/129‑1 (MQ=255)                                                                                                                                gTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCAt                                                                                                                                                                                 <  1:30446/142‑1 (MQ=255)                                                                                                                                   cccTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGcgctgccagagaacggcttgaccagc                                                                                                                                                                                                         >  1:550103‑M1/1‑89 (MQ=255)                                                                                                                                   cccTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGcgctgccagagaacggcttgaccagc                                                                                                                                                                                                         <  2:550102‑M1/115‑27 (MQ=255)                                                                                                                                        gAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAac                                                                                                               <  2:316061/200‑1 (MQ=255)                                                                                                                                           cgggCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCGTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCa                                                                                                                                                                                                  <  1:77160/112‑1 (MQ=255)                                                                                                                                                             cGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCTGTGTACTTTgg                                                                                 <  1:708390/209‑1 (MQ=255)                                                                                                                                                                 aTGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCCCCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTa                                                                                       <  1:88499/199‑1 (MQ=255)                                                                                                                                                                      gTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATcc                                                                   >  2:414680/1‑214 (MQ=255)                                                                                                                                                                            tGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACtttt                                                                                  >  2:120642/1‑192 (MQ=255)                                                                                                                                                                                 gggCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGGGGCa                                                                                                                                         >  1:86626/1‑133 (MQ=255)                                                                                                                                                                                  ggCCTGGACACGCGCTTCGTCGACGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCActgct                                 <  1:261039/236‑1 (MQ=255)                                                                                                                                                                                      tGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGc                              >  1:705146/1‑235 (MQ=255)                                                                                                                                                                                        gACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGcc                                                                                            <  2:691139/171‑1 (MQ=255)                                                                                                                                                                                                cTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGCCGAGTTTTCAg                   >  1:494376/1‑236 (MQ=255)                                                                                                                                                                                                              tGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCCAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAaccac                                                                                                            >  2:260845/1‑133 (MQ=255)                                                                                                                                                                                                                 ccACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGCCGAGTTTTCAGGGGTAGTCGCGGCGATc  <  1:509320/236‑1 (MQ=255)                                                                                                                                                                                                                  cACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGCCGAGTTTTCAGGGGTAGTCGCGGCGa    >  2:473126/1‑233 (MQ=255)                                                                                                                                                                                                                        gcTGGTCAAGCCGTTCTCTGGCAGCGcagcgcggtgggcaggccctcgacgaagcgcgtgtccaggcccatccagctaaccgcatggcggataccgtccagggccagctccaggg                                                                                                                    <  2:550102‑M2/115‑90 (MQ=255)                                                                                                                                                                                                                        gcTGGTCAAGCCGTTCTCTGGCAGCGcagcgcggtgggcaggccctcgacgaagcgcgtgtccaggcccatccagctaaccgcatggcggataccgtccagggccagctccaggg                                                                                                                    >  1:550103‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                        gcTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGc                                                   >  1:154246/1‑180 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  GCCCTGAAACGGGTGAAGGTGTATGAAGCCTTTGTCGAAGGCGCCACGGAAGGCTTCGATGTGGCCAAGAGCCTGCTGCCCTACCTGGTGGCGATGCTGGTGGCGGTGGGTGTGCTGCGCGCCTCTGGTGCCCTGGAGCTGGCCCTGGACGGTATCCGCCATGCGGTTAGCTGGATGGGCCTGGACACGCGCTTCGTCGAGGGCCTGCCCACCGCGCTGGTCAAGCCGTTCTCTGGCAGCGCAGCGCGGGCAATGCTGATCGAGACCATGCAGACCCAAGGCGTGGACAGTTTCCCTGCCTTGGTGGCAGCGACGATTCAGGGCAGCACCGAAACCACCTTCTACGTACTGGCCGTGTACTTTGGTGCCGTGGGCATCCAGCGCGTGCGCCATGCGGTCGGTTGCGCACTGCTGGCCGAGTTTTCAGGGGTAGTCGCGGCGATC  >  AE015451/147002‑147445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.