New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 596123	29 (0.710)	3 (0.080)	3/320	NT	9.6%	coding (31/1266 nt)	PP_0506	putative ABC efflux transporter, permease protein
	?	AE015451	= 596124	29 (0.750)					coding (30/1266 nt)	PP_0506	putative ABC efflux transporter, permease protein

GCATAGTGCTGGAAGCTGTCCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/595885‑596123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggccagCCTGGCCAACCGCCGATTCACTGCGTTTCTGACCGCCTTTGCCATTGCCCTGTCGGTGTGCCTGCTGCTGGCTGTTGAGCGGG  <  AE015451/596124‑596042                                                                                                                                                                                                                                                                                                                                    GCATAGTGCTGGAAGCTGTCCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGC                                                                                        >  1:658220/1‑236    TAGTGCTGGAAGCTGTCCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCC                                                                                       <  2:666382/234‑1          TGGAAGCTGTCCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGGGAATCGGCGGCTGGC                                                                                        >  1:221704/1‑227                    CCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGGTGGg                                                                                        >  1:234783/1‑216                                          GTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGCCTGGCCAA                                                                            <  2:667750/207‑1                                                                                                                                          GGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGGTG                                                                                          >  2:78390/1‑97                                                                                                                                                                                                   AATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGCCTGGCCAACCGCCGATTCACTGCGTTTCTGACCGCCTTTGCCATTGCCCTGTCGGTGTGCCTGCTGCTGGCTGTTGAGCGGG  >  1:279690/1‑128                                                                                                                                                                                                   AATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGCCTGGCCAACCGCCGATTCACTGCGTTTCTGACCGCCTTTGCCATTGCCCTGTCGGTGTGCCTGCTGCTGGCTGTTGAGCGGG  <  2:279689/128‑1                                                                                                                                                                                                                                       ttgGGCCAGCCGGCCCAACCGCCGATTCACTGCGTTTCGGACCGCCTTTGCCATTGCCCTGTCGGTGTGCCTGCTGCTGGCTGTTGAGCG    <  2:204709/87‑1                                                                                                                                                                                                                                                                                                                                    GCATAGTGCTGGAAGCTGTCCCAGCGGATGTTATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/595885‑596123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggccagCCTGGCCAACCGCCGATTCACTGCGTTTCTGACCGCCTTTGCCATTGCCCTGTCGGTGTGCCTGCTGCTGGCTGTTGAGCGGG  <  AE015451/596124‑596042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.