New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 596123 | 29 (0.710) | 3 (0.080) | 3/320 | NT | 9.6% | coding (31/1266 nt) | PP_0506 | putative ABC efflux transporter, permease protein |
? | AE015451 | = 596124 | 29 (0.750) | coding (30/1266 nt) | PP_0506 | putative ABC efflux transporter, permease protein |
TATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCG > AE015451/595916‑596331 | tATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGa > 1:557378/1‑228 (MQ=255) tATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGa < 2:557377/228‑1 (MQ=255) gTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGcctggccaa < 2:667750‑M1/207‑10 (MQ=255) tGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTGCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTc < 1:66236/234‑1 (MQ=255) tGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCaaggcaaggc < 2:314567/207‑1 (MQ=255) ggAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCt < 2:576582/233‑1 (MQ=255) acacCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTggcg < 1:372060/235‑1 (MQ=255) acCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGATGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTggcg < 1:229731/233‑1 (MQ=255) ggtCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATc > 1:324525/3‑196 (MQ=255) cGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACa < 2:389480/233‑1 (MQ=255) cGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAgcg > 1:265311/1‑236 (MQ=255) aTCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGcc < 1:238634/236‑1 (MQ=255) ccGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTc > 1:486006/1‑235 (MQ=255) aTGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTGCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTgg > 2:367826/1‑233 (MQ=255) tGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGcc < 2:674236/151‑1 (MQ=255) aCCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCa < 1:552450/236‑1 (MQ=255) cccGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccatt > 1:279690‑M2/1‑83 (MQ=255) cccGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccatt < 2:279689‑M2/128‑46 (MQ=255) cGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCCGAAACGCAGTGAATCGGCGGTTGGGCCGGctggcccaa < 2:204709‑M2/90‑10 (MQ=255) cGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCCGACGAACAGCAGGcgg > 2:552449/1‑210 (MQ=255) aaCAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAAcag > 1:358846/1‑236 (MQ=255) ggCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAAt < 1:637314/235‑1 (MQ=255) gCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATg > 1:305367/1‑235 (MQ=255) cacaCCGACGGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGctct < 1:516304/165‑1 (MQ=255) aCAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACa < 2:675655/143‑1 (MQ=255) aaTGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGcctggccaaccgccgattcactgcgtttctgaccgcctttgccattgccctgtcggtgtgcctgctgctggctgttgagcggg < 2:279689‑M1/128‑84 (MQ=255) aaTGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGcctggccaaccgccgattcactgcgtttctgaccgcctttgccattgccctgtcggtgtgcctgctgctggctgttgagcggg > 1:279690‑M1/1‑45 (MQ=255) gCAAAGGCGGTCAGAAACGAAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATc < 1:225328/196‑1 (MQ=255) cAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCg > 2:545797/1‑106 (MQ=255) cAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCg < 1:545798/106‑1 (MQ=255) aaaGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACCGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGAc > 2:65643/1‑158 (MQ=255) gCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGa > 2:310737/1‑207 (MQ=255) cGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGt > 2:608400/1‑146 (MQ=255) ggTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCgtg < 1:310738/219‑1 (MQ=255) gAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCg > 1:47582/1‑236 (MQ=255) ttgggccaGccggcccaaccgccgattcactgcgtttcggaccgcctttgccattgccctgtcggtgtgcctgctgctggctgttgagcg < 2:204709‑M1/87‑82 (MQ=255) ttGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccattgccctgtcggtgtgcctgctgctggctgttgagcgggtccgtaccgaagcccgtgccagcttcgccagcaccatcagcggcaccgacctgatagtcggtgcacgctccggctcggtgaacctgctgctgtattcggtgttccgcattggcaac < 2:667750‑M2/207‑199 (MQ=255) ccAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCgt > 2:323293/1‑189 (MQ=255) | TATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCG > AE015451/595916‑596331 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |