New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 596123	29 (0.710)	3 (0.080)	3/320	NT	9.6%	coding (31/1266 nt)	PP_0506	putative ABC efflux transporter, permease protein
	?	AE015451	= 596124	29 (0.750)					coding (30/1266 nt)	PP_0506	putative ABC efflux transporter, permease protein

TATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCG  >  AE015451/595916‑596331                                                                                                                                                                                                                 |                                                                                                                                                                                                                tATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGa                                                                                                                                                                                              <  2:557377/228‑1 (MQ=255) tATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGa                                                                                                                                                                                              >  1:557378/1‑228 (MQ=255)             tGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTGCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTc                                                                                                                                                                            <  1:66236/234‑1 (MQ=255)                   tGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCaaggcaaggc                                                                                                                                                                                                 <  2:314567/207‑1 (MQ=255)                      ggAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCt                                                                                                                                                                    <  2:576582/233‑1 (MQ=255)                         acacCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTggcg                                                                                                                                                               <  1:372060/235‑1 (MQ=255)                           acCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGATGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTggcg                                                                                                                                                               <  1:229731/233‑1 (MQ=255)                                            ggtCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATc                                                                                                                                                                                   >  1:324525/3‑196 (MQ=255)                                                                   cGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACa                                                                                                                       <  2:389480/233‑1 (MQ=255)                                                                   cGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAgcg                                                                                                                    >  1:265311/1‑236 (MQ=255)                                                                        aTCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGcc                                                                                                               <  1:238634/236‑1 (MQ=255)                                                                                    ccGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTc                                                                                                    >  1:486006/1‑235 (MQ=255)                                                                                          aTGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTGCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTgg                                                                                                >  2:367826/1‑233 (MQ=255)                                                                                              tGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGcc                                                                                                                                                                              <  2:674236/151‑1 (MQ=255)                                                                                                                              aCCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCa                                                         <  1:552450/236‑1 (MQ=255)                                                                                                                               cccGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccatt                                                                                                                                                                    >  1:279690‑M2/1‑83 (MQ=255)                                                                                                                               cccGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccatt                                                                                                                                                                    <  2:279689‑M2/128‑46 (MQ=255)                                                                                                                                 cGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCCGAAACGCAGTGAATCGGCGGTTGGGCCGGctggcccaa                                                                                                                                                                                                        <  2:204709‑M2/90‑10 (MQ=255)                                                                                                                                 cGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCCGACGAACAGCAGGcgg                                                                              >  2:552449/1‑210 (MQ=255)                                                                                                                                      aaCAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAAcag                                                 >  1:358846/1‑236 (MQ=255)                                                                                                                                                    ggCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAAt                                    <  1:637314/235‑1 (MQ=255)                                                                                                                                                     gCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATg                                   >  1:305367/1‑235 (MQ=255)                                                                                                                                                      cacaCCGACGGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGctct                                                                                                        <  1:516304/165‑1 (MQ=255)                                                                                                                                                             aCAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACa                                                                                                                       <  2:675655/143‑1 (MQ=255)                                                                                                                                                                        gCAAAGGCGGTCAGAAACGAAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATc                                                       <  1:225328/196‑1 (MQ=255)                                                                                                                                                                         cAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCg                                                                                                                                                >  2:545797/1‑106 (MQ=255)                                                                                                                                                                         cAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCg                                                                                                                                                <  1:545798/106‑1 (MQ=255)                                                                                                                                                                          aaaGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACCGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGAc                                                                                           >  2:65643/1‑158 (MQ=255)                                                                                                                                                                              gCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGa                                      >  2:310737/1‑207 (MQ=255)                                                                                                                                                                               cGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGt                                                                                                  >  2:608400/1‑146 (MQ=255)                                                                                                                                                                                ggTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCgtg                        <  1:310738/219‑1 (MQ=255)                                                                                                                                                                                     gAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCg  >  1:47582/1‑236 (MQ=255)                                                                                                                                                                                                         ttGGCCAGGctggccaaccgccgattcactgcgtttctgaccgcctttgccattgccctgtcggtgtgcctgctgctggctgttgagcgggtccgtaccgaagcccgtgccagcttcgccagcaccatcagcggcaccgacctgatagtcggtgcacgctccggctcggtgaacctgctgctgtattcggtgttccgcattggcaac           <  2:667750‑M2/207‑199 (MQ=255)                                                                                                                                                                                                             ccAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCgt                         >  2:323293/1‑189 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                TATTGGTCGCGTTGCCAATGCGGAACACCGAATACAGCAGCAGGTTCACCGAGCCGGAGCGTGCACCGACTATCAGGTCGGTGCCGCTGATGGTGCTGGCGAAGCTGGCACGGGCTTCGGTACGGACCCGCTCAACAGCCAGCAGCAGGCACACCGACAGGGCAATGGCAAAGGCGGTCAGAAACGCAGTGAATCGGCGGTTGGCCAGGCTGGCCAAGGCAAGGCGGAGCAGGTACATCAGGCCTCCCGGGGCTTGGCGGCGCGGTTCAGTTCGGCAAGCGACAGGTGGCGGTCGAACAGCGGCGCCAGGCTCTGGTCGTGGCTGACGAACAGCAGGCTGGCACCGGCGGCGCGGCACTCATCGAACAGCAGGCGGATGAATGCTTCGCGCGTGTCCGCATCCAGTGCCGAGGTCG  >  AE015451/595916‑596331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.