New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 886151	40 (0.980)	3 (0.080)	3/316	NT	6.9%	coding (2062/2718 nt)	PP_0767	Transcriptional regulator, LuxR family
	?	AE015451	= 886185	43 (1.120)					coding (2096/2718 nt)	PP_0767	Transcriptional regulator, LuxR family

CGAGGCGCGAGCGTGCCGGGACATCAGTGTGCTCATCGGTCATTGCGTGATTGCCACGCTCGATGGCCGGGAAGGTCACTTTGCCGAGGCCTTTGCGGAGCTGGCCGAGGCCGAGCGCTTGATGCACATCTGGGATGTGCCCCCGGTCTACTACCTGGCCATGATTACCCTGGTCAAATGCGAACTGTGGCTGGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/885952‑886151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcccaggCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGGCCAGCCACAGTTCGCATTTGACCAGGGTAATCATGGCCAGGTAGTAGACCGGGGGCACATCCCAGATGTGCATCAAGCGCTCGGCCTCGGCCAGCTCCGCAAA  <  AE015451/886185‑886043                                                                                                                                                                                                                                                                                                                                                         CGAGGCGCGAGCGTGCCGGGACATCAGTGTGCTCATCGGTCATTGCGTGATTGCCACGCTCGATGGCCGGGAAGGTCACTTTGCCGAGGCCTTTGCGGAGCTGGCCGAGGCCGAGCGCTTGATGCACATCTGGGATGTGCCCCCGGTCTACTACCTGGCCATGATTACCCTGGTCAAATGCGAACTGTGGCTGGCC                                                                                                                                                     >  2:461272/1‑196                                                                                                                                        TGTGCCCCCGGTCTACTACCTGGCCATGATTACCCTGGTCAAATGCGAACTGTGGCTGGCCCAGGCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGG                                                                                                         >  1:270372/1‑105                                                                                                                                        TGTGCCCCCGGTCTACTACCTGGCCATGATTACCCTGGTCAAATGCGAACTGTGGCTGGCCCAGGCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGG                                                                                                         <  2:270371/105‑1                                                                                                                                                                                AAATGCGAACTGTGGCTGGCCCAGGCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGGCCAGCCACAGTTCGCATTTGACCAGGGTAATCATGGCCAGGTAGTAGACCGGG                                                    >  2:629807/1‑118                                                                                                                                                                                                   CCCAGGCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGGCCAGCCACAGTTCGCATTTGACCAGGGTAATCATGGCCAGGTAGAAGACCGGGGGCACATCTCAGATGTGCATCAAGCGCTCGGCCGCGGCCGGCTCCGCAAA  >  1:138069/1‑149                                                                                                                                                                                                      AGGCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGGCCAGCCACAGTTCGCATTTGACCAGGGTAATCATGGCCAGGCAGTAGACCGGGGGCACATCCCAGATGTGCATCAAGCGCTCGG                     >  2:156976/1‑127                                                                                                                                                                                                                                                                                                                                                         CGAGGCGCGAGCGTGCCGGGACATCAGTGTGCTCATCGGTCATTGCGTGATTGCCACGCTCGATGGCCGGGAAGGTCACTTTGCCGAGGCCTTTGCGGAGCTGGCCGAGGCCGAGCGCTTGATGCACATCTGGGATGTGCCCCCGGTCTACTACCTGGCCATGATTACCCTGGTCAAATGCGAACTGTGGCTGGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/885952‑886151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcccaggCGCTGCAGCCAGGACTCCGCGAGGTCCGTACGCCCCTGGGCCAGCCACAGTTCGCATTTGACCAGGGTAATCATGGCCAGGTAGTAGACCGGGGGCACATCCCAGATGTGCATCAAGCGCTCGGCCTCGGCCAGCTCCGCAAA  <  AE015451/886185‑886043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.