New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1587163	24 (0.590)	4 (0.100)	4/326	NT	14.7%	coding (243/909 nt)	PP_1391	Transcriptional regulator, LysR family
	?	AE015451	= 1587173	23 (0.580)					coding (233/909 nt)	PP_1391	Transcriptional regulator, LysR family

ACACTCAGGCGCCGGGCGATGAGGCTGGGGTCCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1586927‑1587163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAAT  <  AE015451/1587173‑1586965                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACACTCAGGCGCCGGGCGATGAGGCTGGGGTCCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGt                                                                                                                                                                                                                    >  2:706953/1‑235                                                                                                                                                                      GCCTGGCCGAATGAGGTACTGACGCTGATACTCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGA                                                         <  1:403971/226‑1                                                                                                                                                                              GAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCATATCAGCGTCAGTAGCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGag                                                                                             >  2:403970/1‑180                                                                                                                                                                                                            CCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGG                                                                                                                                                                         >  1:342422/1‑76                                                                                                                                                                                                                   agacaGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAAT  <  1:304551/231‑1                                                                                                                                                                                                                                       CACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCA    >  2:304550/1‑214                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACACTCAGGCGCCGGGCGATGAGGCTGGGGTCCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1586927‑1587163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAAT  <  AE015451/1587173‑1586965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.