New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1587163	24 (0.590)	4 (0.100)	4/326	NT	14.7%	coding (243/909 nt)	PP_1391	Transcriptional regulator, LysR family
	?	AE015451	= 1587173	23 (0.580)					coding (233/909 nt)	PP_1391	Transcriptional regulator, LysR family

TCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCC  >  AE015451/1586963‑1587383                                                                                                                                                                                                         |                                                                                                                                                                                                                             tCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCg                                                                                                                                                                                           >  1:655564/1‑236 (MQ=255)   aTTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagactgtct                                                                                                                                                                                         <  1:304551‑M2/236‑28 (MQ=255)     tGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtg                                                                                                                                                                                                             >  2:304550‑M2/1‑207 (MQ=255)                         tCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGc                                                                                                                                                                                                                        <  1:238128/183‑1 (MQ=255)                                     tCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTg                                                                                                                                                         >  2:729084/1‑234 (MQ=255)                                               tGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCCGCAGTTGCCgg                                                                                                                                                                                          >  2:200251/1‑191 (MQ=255)                                                   ggTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTgcgc                                                                                                                                          >  1:342466/1‑235 (MQ=255)                                                    gTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGCGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCtt                                                                                                                                              >  1:447330/1‑230 (MQ=255)                                                          tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGGATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCTCGGCGGCCGGCACGACGCCGGc                                                                                                                                                                                                             >  2:248634/1‑161 (MQ=255)                                                          tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgagtatcagcgtcagtacctcattcggccaggc                                                                                                                                            <  1:403971‑M2/226‑73 (MQ=255)                                                          tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGt                                                                                                                                     >  2:519511/1‑233 (MQ=255)                                                          tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTc                                                                                                                                   >  1:538864/1‑235 (MQ=255)                                                            gAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTgg                                                                                                                                      <  2:471839/230‑1 (MQ=255)                                                                                 cACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAAc                                                                                                             <  2:655563/234‑1 (MQ=255)                                                                                          aaaGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCa                                                                                                  <  1:706954/236‑1 (MQ=255)                                                                                              ctccgcacATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGCTACTGACGCTGATATGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattc                                                                                                                                                    >  2:403970‑M2/3‑118 (MQ=255)                                                                                                      agaGGCGGCCACTGCATCCGCCAGCGGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAgg                                                                                       <  1:127397/233‑1 (MQ=255)                                                                                                                aCTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCa                                                                                                                             >  2:653183/1‑187 (MQ=255)                                                                                                                aCTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAgg                                                                                                        >  1:695575/1‑207 (MQ=255)                                                                                                                     aTCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCa                                                                                                                             >  2:451939/1‑182 (MQ=255)                                                                                                                            aGCTGTGCCTGGCCGAATGTGGTCCTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAgg                                                                                                                                                                              <  2:200860/126‑1 (MQ=255)                                                                                                                                  gCCTGGCCGAATGAGGTACTGACGCTGATACTCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGacctgcaggccgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattcggccaggcacagctggtggatgcagtggccgcctatgtgcggcgctttcctgacgtgaaggtcgaactgcagatgctcga                                                                    <  1:403971‑M1/226‑155 (MQ=255)                                                                                                                                    cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGAcc                                                                        <  2:538863/220‑1 (MQ=255)                                                                                                                                    cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCa                                                        >  1:383826/1‑236 (MQ=255)                                                                                                                                    cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCa                                                        >  1:690315/1‑236 (MQ=255)                                                                                                                                          gAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGacctgcaggccgccgtgcagcagccggaagacgcaccaaggggggcactgcatatcagcgtcagtagctcattcggccaggcacagctggtggatgcagtggccgcctatgtgcggag                                                                                                        >  2:403970‑M1/1‑64 (MQ=255)                                                                                                                                                                        cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGacctgcaggccgccgtgcagcagccggaagacgcaccaaggg                                                                                                                                                                                    >  1:342422‑M1/1‑34 (MQ=255)                                                                                                                                                                        cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTc                      >  2:382723/1‑234 (MQ=255)                                                                                                                                                                        cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGa                    <  1:538854/236‑1 (MQ=255)                                                                                                                                                                          cccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggg                                                                                                                                                                                  >  1:342422‑M2/1‑42 (MQ=255)                                                                                                                                                                               agacagtcttcCGGCTGCTGCACGGCGacctgcaggccgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattcggccaggcacagctggtggatgcagtggccgcctatgtgcggcgctttcctgacgtgaaggtcgaactgcagatgctcgaccgcaccgtcaacctggtggacgagcgcatcgacctggccattcgcaccagcaat             <  1:304551‑M1/231‑210 (MQ=255)                                                                                                                                                                                      cTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATa                                                              <  1:62792/180‑1 (MQ=255)                                                                                                                                                                                          cGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATAccc  <  1:250780/236‑1 (MQ=255)                                                                                                                                                                                                   cACGGCGacctgcaggccgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattcggccaggcacagctggtggatgcagtggccgcctatgtgcggcgctttcctgacgtgaaggtcgaactgcagatgctcgaccgcaccgtcaacctggtggacgagcgcatcgacctggccattcgcaccagca               >  2:304550‑M1/1‑7 (MQ=255)                                                                                                                                                                                                      ggcggcCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATGGCAGATCATCCGCCGCCGGCGACTGGCTGCCCAg                         >  1:302680/1‑201 (MQ=255)                                                                                                                                                                                                         |                                                                                                                                                                                                                             TCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCC  >  AE015451/1586963‑1587383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.