New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 1587163 | 24 (0.590) | 4 (0.100) | 4/326 | NT | 14.7% | coding (243/909 nt) | PP_1391 | Transcriptional regulator, LysR family |
? | AE015451 | = 1587173 | 23 (0.580) | coding (233/909 nt) | PP_1391 | Transcriptional regulator, LysR family |
TCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCC > AE015451/1586963‑1587383 | tCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCg > 1:655564/1‑236 (MQ=255) aTTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagactgtct < 1:304551‑M2/236‑28 (MQ=255) tGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtg > 2:304550‑M2/1‑207 (MQ=255) tCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTg > 2:729084/1‑234 (MQ=255) tGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCCGCAGTTGCCgg > 2:200251/1‑191 (MQ=255) ggTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTgcgc > 1:342466/1‑235 (MQ=255) gTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGCGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCtt > 1:447330/1‑230 (MQ=255) tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGGATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCTCGGCGGCCGGCACGACGCCGGc > 2:248634/1‑161 (MQ=255) tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgagtatcagcgtcagtacctcattcggccaggc < 1:403971‑M2/226‑73 (MQ=255) tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGt > 2:519511/1‑233 (MQ=255) tCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTc > 1:538864/1‑235 (MQ=255) gAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTgg < 2:471839/230‑1 (MQ=255) cACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAAc < 2:655563/234‑1 (MQ=255) aaaGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCa < 1:706954/236‑1 (MQ=255) ctccgcacATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGCTACTGACGCTGATATGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattc > 2:403970‑M2/3‑118 (MQ=255) agaGGCGGCCACTGCATCCGCCAGCGGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAgg < 1:127397/233‑1 (MQ=255) aCTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCa > 2:653183/1‑187 (MQ=255) aCTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAgg > 1:695575/1‑207 (MQ=255) aTCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCa > 2:451939/1‑182 (MQ=255) aGCTGTGCCTGGCCGAATGTGGTCCTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAgg < 2:200860/126‑1 (MQ=255) cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGAcc < 2:538863/220‑1 (MQ=255) cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCa > 1:690315/1‑236 (MQ=255) cTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCa > 1:383826/1‑236 (MQ=255) cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTc > 2:382723/1‑234 (MQ=255) cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGa < 1:538854/236‑1 (MQ=255) cccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggg > 1:342422‑M2/1‑42 (MQ=255) cTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATa < 1:62792/180‑1 (MQ=255) cGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATAccc < 1:250780/236‑1 (MQ=255) ggcggcCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATGGCAGATCATCCGCCGCCGGCGACTGGCTGCCCAg > 1:302680/1‑201 (MQ=255) aGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAAc > 1:579967/1‑107 (MQ=255) aGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAAc < 2:579966/107‑1 (MQ=255) | TCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCC > AE015451/1586963‑1587383 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |