New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2691885	29 (0.710)	3 (0.080)	3/312	NT	9.5%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	AE015451	= 2691895	30 (0.790)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

AGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2691672‑2691885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCACACCGTAGATGGGAATCGGTACTTGCTGGCTGCTGCTAATGGTGAAGGCCCGTGCCTGGCCGACGCCGTAGCGGCTGTTGCCGC  <  AE015451/2691895‑2691664                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTG                                                                                                                                                                                                                                                 >  2:638639/1‑207                                                                                                                                                     AACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCTCATCGGAGTCTCCTTGCGGGGTTACCAGTCCAGGGTCACTCTGAGGGCGTCGCGGTAAAGCCCG                                                                                                                     >  1:173927/1‑183                                                                                                                                                                            CGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAG                                                                                                                                                    >  1:2209/1‑129                                                                                                                                                                            CGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAG                                                                                                                                                    <  2:2209/129‑1                                                                                                                                                                                                           GCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGG                                                                                                                                      >  1:563357/1‑112                                                                                                                                                                                                           GCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGG                                                                                                                                      <  2:563356/112‑1                                                                                                                                                                                                               GGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTG                                                                                                                                    >  1:509661/1‑110                                                                                                                                                                                                               GGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTG                                                                                                                                    <  2:509660/110‑1                                                                                                                                                                                                                 GCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACC                                                                                       >  1:617946/1‑153                                                                                                                                                                                                                 GCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACC                                                                                       <  2:617945/153‑1                                                                                                                                                                                                                 GCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGA                                                                                                                                                                                                           <  2:586681/37‑1                                                                                                                                                                                                                   CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCACACCGTAGATGGGAATCGGTACTTGCTGGCTGCTGCTAATGGTGAAGGCCCGTGCCTGGCCGACGCCGTAGCGGCTGTTGCCG   >  1:638640/1‑235                                                                                                                                                                                                                   CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCACACCGTAGATGGGAATCGGTACTTGCTGGCTGCTGCTAATGGTGAAGGCCCGTGCCTGGCCGACGCCGTACCGGCTGTTGCCGC  >  1:534903/1‑236                                                                                                                                                                                                                   CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGCTCGCATCGGAG                                                                                                                                                                             >  2:26386/1‑65                                                                                                                                                                                                                      GGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGC                                                                                                      <  2:573890/133‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2691672‑2691885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCACACCGTAGATGGGAATCGGTACTTGCTGGCTGCTGCTAATGGTGAAGGCCCGTGCCTGGCCGACGCCGTAGCGGCTGTTGCCGC  <  AE015451/2691895‑2691664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.