New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2691885	29 (0.710)	3 (0.080)	3/312	NT	9.5%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	AE015451	= 2691895	30 (0.790)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

GCGGCAACAGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAGGTACGGTACCTGTGATCAAAGTGAGT  >  AE015451/2691664‑2692124                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      gcggcAACAGCCGGTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccag                                                                                                                                                                                                                                   >  1:534903‑M2/1‑232 (MQ=255)  cggcAACAGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccag                                                                                                                                                                                                                                   >  1:638640‑M2/1‑231 (MQ=255)             gCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAggcgg                                                                                                                                                                                                                         <  1:544967/234‑1 (MQ=255)                                 cGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAg                                                                                                                                                                                                         <  1:29837/230‑1 (MQ=255)                                 cGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCa                                                                                                                                                                                                    <  1:409608/235‑1 (MQ=255)                                                         ccgcAAGTACCGCTTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAg                                                                                                                                                                                                   <  1:25820/210‑1 (MQ=255)                                                                   cGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCGTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGAc                                                                                                                                                                                                               <  2:105068/190‑1 (MQ=255)                                                                                      ggTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggc                                                                                                                                                                                                                                 <  2:617945‑M2/153‑7 (MQ=255)                                                                                      ggTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggc                                                                                                                                                                                                                                 >  1:617946‑M2/1‑147 (MQ=255)                                                                                                 aaCCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATggcacgtcg                                                                                                                                                     <  1:63104/218‑1 (MQ=255)                                                                                                     gcgTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCc                                                                                                                                                                                                                                      <  2:573890‑M2/133‑2 (MQ=255)                                                                                                          cgcTGCCGGCCGGGCTTTACCGCGACACCCTCAAAGTGACCCTAGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTa                                                                                                                                                                                                       >  2:465987/1‑159 (MQ=255)                                                                                                             tGCCGGCCGGGCTGTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACt                                                                                                                                  <  1:135771/225‑1 (MQ=255)                                                                                                                    cggGCTTTACCGCGACGCCCTCAGAGTGACCCTGGACTGGTAACCCCGCAAGGAGACTCCGATGAGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggtt                                                                                                                                                                     >  1:173927‑M2/1‑117 (MQ=255)                                                                                                                     gggCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATggcacgtcgg                                                                                                                                                    >  2:227906/1‑199 (MQ=255)                                                                                                                            aCCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCg                                                                                                                                                                                               <  2:386596/149‑1 (MQ=255)                                                                                                                                   cacCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggccc                                                                                                                                                                                                                               >  1:509661‑M2/1‑102 (MQ=255)                                                                                                                                   cacCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggccc                                                                                                                                                                                                                               <  2:509660‑M2/110‑9 (MQ=255)                                                                                                                                     cccTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc                                                                                                                                                                                                                           >  1:563357‑M2/1‑100 (MQ=255)                                                                                                                                     cccTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc                                                                                                                                                                                                                           <  2:563356‑M2/112‑13 (MQ=255)                                                                                                                                                aCCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCAccgc                                                                                    >  1:312457/1‑236 (MQ=255)                                                                                                                                                   cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcg                                                                                                                                                                                            >  1:2209‑M2/1‑86 (MQ=255)                                                                                                                                                   cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcg                                                                                                                                                                                            <  2:2209‑M2/129‑44 (MQ=255)                                                                                                                                                   cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGAt                                                                                                     <  1:597280/216‑1 (MQ=255)                                                                                                                                                   cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGAt                                                                                                     >  2:597279/1‑216 (MQ=255)                                                                                                                                                   cTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTCGCTTCCCAGGCCCAGGCGGCCACGGTCACAGGGAGTATCCGcc                                                                                                                                                                                                 >  2:60346/1‑123 (MQ=255)                                                                                                                                                                 aCGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGTGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACtt                                                                                                                  <  1:240458/189‑1 (MQ=255)                                                                                                                                                                            cTCCGATGCGAGCGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccag                                                                                                                                                                                                                                   >  2:26386‑M2/1‑61 (MQ=255)                                                                                                                                                                                    cgaacgaaCCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGccccg                                                                          >  1:79249/1‑208 (MQ=255)                                                                                                                                                                                          aacCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTg                                                                                                                       >  2:751155/1‑159 (MQ=255)                                                                                                                                                                                                       gCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGGACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATg                                                                               <  1:573891/186‑1 (MQ=255)                                                                                                                                                                                                       gCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAgg                                                      <  1:747007/211‑1 (MQ=255)                                                                                                                                                                                                          tCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggc                                                                                                                                                                                                                                 <  2:586681‑M2/37‑7 (MQ=255)                                                                                                                                                                                                             tCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGcc                                                  >  2:369409/1‑209 (MQ=255)                                                                                                                                                                                                             tCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCtg                                      >  2:749011/1‑221 (MQ=255)                                                                                                                                                                                                             tCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGctct                                >  1:641117/1‑227 (MQ=255)                                                                                                                                                                                                             tCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCATGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGCGCATCCTGTGCTCTGCAggta                         >  1:421953/1‑234 (MQ=255)                                                                                                                                                                                                             tCGCAGGCCTGGACCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAg                                                       >  2:419858/1‑204 (MQ=255)                                                                                                                                                                                                                  ggcctgggcctgGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAggtacggt                     <  2:674450/233‑1 (MQ=255)                                                                                                                                                                                                                      tgggcctggCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAggtacggtac                   <  1:419859/231‑1 (MQ=255)                                                                                                                                                                                                                                gTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCg                                                                                                                <  1:598751/128‑1 (MQ=255)                                                                                                                                                                                                                                gTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCg                                                                                                                >  2:598750/1‑128 (MQ=255)                                                                                                                                                                                                                                gTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAGGTACGGTACCTGTGATCAAagtga    >  1:477353/1‑236 (MQ=255)                                                                                                                                                                                                                                  tGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCtg                                      <  1:323170/200‑1 (MQ=255)                                                                                                                                                                                                                                  tGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAGGTACGGTACCTGTGATCAAagtgagt  <  1:19141/236‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      GCGGCAACAGCCGCTACGGCGTCGGCCAGGCACGGGCCTTCACCATTAGCAGCAGCCAGCAAGTACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTCGTCACCGCCGATGCCCAGGTGCTGGGAGGCGGGGGAGGCGCCATGAGCATCCTGTGCTCTGCAGGTACGGTACCTGTGATCAAAGTGAGT  >  AE015451/2691664‑2692124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.