New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 332856635 (0.860)4 (0.100) 4/314 NT 11.0% coding (117/1047 nt) PP_2927 conserved protein of unknown function
?AE015451 = 3328706 32 (0.840)coding (257/1047 nt) PP_2927 conserved protein of unknown function

CCTCGTTGGCGATGGCCTTCTTGCAGAGGAGGGCAGGTCATGGACGAGGCAAGGCTTCACGATTTCATGGGCAAGCTGGTGGGCGACATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3328411‑3328566
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccatggccTGTTCTTCAGGCAGCACAAAACGGCCCTTGTCATGGACCATGTAGCCCGATGCCGCCTGGGCATTCAACCATTCTCGCAC  <  AE015451/3328706‑3328627
                                                                                                                                                                                                                                            
CCTCGTTGGCGATGGCCTTCTTGCAGAGGAGGGCAGGTCATGGACGAGGCAAGGCTTCACGATTTCATGGGCAAGCTGGTGGGCGACATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCTGTTCTTCAGGCAGCACAAAACGGCCCTTGTCATGGACCATGTAGCCCGATGCCGCCTGGGCATTCAACCATTCTCGCAC  <  1:224991/236‑1
                               GGCAGGTCATGGACGAGGCAAGGCTTCACGATTTCATGGGCAAGCTGGTGGGCGACATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCTGTTCTTCAGGCAGCACAAAACGGCCCTT                                                     >  1:25004/1‑154
                               GGCAGGTCATGGACGAGGCAAGGCTTCACGATTTCATGGGCAAGCTGGTGGGCGACATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCTGTTCTTCAGGCAGCACAAAACGGCCCTT                                                     <  2:25004/154‑1
                                                                                                                              GATGAACTGGGGCTGTACCGGGCCATGGCCTGTTCTTCAGGCAGCACAAAACG                                                           >  1:724692/1‑53
                                                                                                                                                 GGGCCATGGCCTGTTCTTCAGGCAGCACAAAACGGCCCTTGTCATGGACCATGTAGCCCGATGCCGC                          >  1:473730/1‑67
                                                                                                                                                 GGGCCATGGCCTGTTCTTCAGGCAGCACAAAACGGCCCTTGTCATGGACCATGTAGCCCGATGCCGC                          <  2:473729/67‑1
                                                                                                                                                                                                                                            
CCTCGTTGGCGATGGCCTTCTTGCAGAGGAGGGCAGGTCATGGACGAGGCAAGGCTTCACGATTTCATGGGCAAGCTGGTGGGCGACATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3328411‑3328566
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccatggccTGTTCTTCAGGCAGCACAAAACGGCCCTTGTCATGGACCATGTAGCCCGATGCCGCCTGGGCATTCAACCATTCTCGCAC  <  AE015451/3328706‑3328627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.