New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3328566	35 (0.860)	4 (0.100)	4/314	NT	11.0%	coding (117/1047 nt)	PP_2927	conserved protein of unknown function
	?	AE015451	= 3328706	32 (0.840)					coding (257/1047 nt)	PP_2927	conserved protein of unknown function

ATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGCTGCCGGCACTGGAGGG  >  AE015451/3328498‑3328931                                                                                                                                                                                                                 |                                                                                                                                                                                                                                  aTGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGAc                                                                                                                                                                                                          <  1:162993/234‑1 (MQ=255)  tGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTcc                                                                                                                                                                                                       <  1:683004/236‑1 (MQ=255)                   cTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCcgg                                                                                                                                                                                      <  1:41982/236‑1 (MQ=255)                                   tcGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGgcggcgcggc                                                                                                                                                                             <  1:533718/229‑1 (MQ=255)                                      gCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTggcg                                                                                                                                                                   <  1:684343/236‑1 (MQ=255)                                                            ggCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCcggc                                                                                                                                                                                     >  2:451603/1‑196 (MQ=255)                                                               cATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTAcc                                                                                                                                                                                             >  1:684988/1‑184 (MQ=255)                                                               cATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCGGAAGAACAGGCCATGGCCCTGGCGCTggagga                                                                                                                                                                                                           >  1:359125/1‑171 (MQ=255)                                                                    ccGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGgcggcgc                                                                                                                                                                                >  1:148593/1‑193 (MQ=255)                                                                    ccGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCa                                                                                                                                                                            >  2:754691/1‑197 (MQ=255)                                                                    ccGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCAt                                                                                                                                                       >  1:10514/1‑218 (MQ=255)                                                                                         cTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGc                                                                                                                <  1:754692/236‑1 (MQ=255)                                                                                         cTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGc                                                                                                                <  1:257466/236‑1 (MQ=255)                                                                                            aGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATgacaagg                                                                                                                                                <  1:548082/201‑1 (MQ=255)                                                                                                    gCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAgccg                                                                                                                                 >  1:136544/1‑208 (MQ=255)                                                                                                    gCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTg                                                                                                     <  1:462275/236‑1 (MQ=255)                                                                                                    gCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGGGGTGGCGGCGCt                                                                                                                                                              >  2:198691/1‑179 (MQ=255)                                                                                                    ccGGAAAAGACCGGCTGCAACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATAGCGGGTTGGCCTg                                                                                                     <  2:517562/235‑1 (MQ=255)                                                                                                                       aCCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCgcggcg                                                                                                                     <  1:416987/201‑1 (MQ=255)                                                                                                                                  gTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAggccatggcccggtacagccccagttcatcgccgagaatgacattggccagcgtcgccgctgcgcccatgtcgcccaccagcttgcccatgaaatcgtgaagccttgcctcgtccatgacctgccctcctctgcaagaaggccatcgccaacgagg                                                                       <  1:224991‑M2/236‑157 (MQ=255)                                                                                                                                            ggTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACCTGGCCGGCGGCGCGGCAGTGGGGGCGGCGCTGt                                                                                                                                                            >  2:174826/1‑141 (MQ=255)                                                                                                                                                      ccAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTccgg                                                    <  1:85081/235‑1 (MQ=255)                                                                                                                                                        aGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATgacaa                                                                                                                                                  <  2:297483/139‑1 (MQ=255)                                                                                                                                                          gcggcATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAggccatggccc                                                                                                                                                                                                                        >  1:473730‑M2/1‑56 (MQ=255)                                                                                                                                                          gcggcATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAggccatggccc                                                                                                                                                                                                                        <  2:473729‑M2/67‑12 (MQ=255)                                                                                                                                                             ccATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATcacc                                                                                          <  1:329472/189‑1 (MQ=255)                                                                                                                                                                                  gACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTccgg                                                    <  1:619439/207‑1 (MQ=255)                                                                                                                                                                                   aCAAGGGCCGTTTTGTGCGGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGa                       <  1:542003/235‑1 (MQ=255)                                                                                                                                                                                     aaGGGCCGTTTTGTGCTGCCTGAAGAACAggccatggcccggtacagccccagttcatcgccgagaatgacattggccagcgtcgccgctgcgcccatgtcgcccaccagcttgcccatgaaatcgtgaagccttgcctcgtccatgacctgcc                                                                                                      >  1:25004‑M2/1‑29 (MQ=255)                                                                                                                                                                                     aaGGGCCGTTTTGTGCTGCCTGAAGAACAggccatggcccggtacagccccagttcatcgccgagaatgacattggccagcgtcgccgctgcgcccatgtcgcccaccagcttgcccatgaaatcgtgaagccttgcctcgtccatgacctgcc                                                                                                      <  2:25004‑M2/154‑126 (MQ=255)                                                                                                                                                                                        ggCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGc                  <  1:362260/235‑1 (MQ=255)                                                                                                                                                                                           cGTTTTGTGCTGCCTGAAGAACAggccatggcccggtacagccccagttcatc                                                                                                                                                                                                     >  1:724692‑M2/1‑23 (MQ=255)                                                                                                                                                                                               ttGTGCTGCCTGAAGAACAGCCCACGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGc                                                                                                                <  2:561778/134‑1 (MQ=255)                                                                                                                                                                                                tgtgCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCa                                       >  2:11721/1‑206 (MQ=255)                                                                                                                                                                                                tgtgCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGc                          <  1:12839/219‑1 (MQ=255)                                                                                                                                                                                                tgtgCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGCTGCCGGCa          >  1:563853/1‑235 (MQ=255)                                                                                                                                                                                                        cTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGCTGCCGGCACTGGAggg  <  1:11721/235‑1 (MQ=255)                                                                                                                                                                                                           aagaaCAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGc                  <  2:563852/216‑1 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                  ATGGGCGCAGCGGCGACGCTGGCCAATGTCATTCTCGGCGATGAACTGGGGCTGTACCGGGCCATGGCCGACAGCCAGGCGGTCACCCCTGAGCAACTGGCGGAAAAGACCGGCTGCCACCCGCGGCTGGTGCGAGAATGGTTGAATGCCCAGGCGGCATCGGGCTACATGGTCCATGACAAGGGCCGTTTTGTGCTGCCTGAAGAACAGGCCATGGCCCTGGCGCTGGAGGACTCCCCGGCCTACATGGCCGGCGGCGCGGCAGTGGTGGCGGCGCTGTTCCATGACAAGGACAAGCTGGTAGCCGCCATGCGCGGCGATGGCGGGTTGGCCTGGGGCGATCACCACCCGTGCATGTTCAGCGGTACCGAGCGCTTTTTCCGGCCGGGGTATCGCACCTTCCTGGTTGCGGATTGGCTGCCGGCACTGGAGGG  >  AE015451/3328498‑3328931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.