New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4865790	30 (0.730)	3 (0.080)	3/316	NT	9.3%	coding (83/3489 nt)	smc	Chromosome partition protein Smc
	?	AE015451	= 4865814	30 (0.780)					coding (59/3489 nt)	smc	Chromosome partition protein Smc

GGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4865548‑4865790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccacggTCAACTTCCCCAGCAACATGGCTGCCGTGGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGTGCGTTGGGTGATGGGCGAGAGTTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGACGTCATCTTCAACGGCTCCAGTGGCCGCAAGC  <  AE015451/4865814‑4865653                                                                                                                                                                                                                                                                                                                                                                                                                       GGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCC                                                                                                                                                                            <  1:703489/235‑1                                GTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTTGGCCGACCA                                                                                                                                                                       >  1:129423/1‑209                                                                                                                                                                                            CCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGTCAACTTCCCCAGCAACATGGCTGCCGTGGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGT                                                                                           >  2:716147/1‑129                                                                                                                                                                                                         TCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGTCAACTTCCCCAGCAACATGGCTGCCGTGGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGTGCGTTGGGTGATGGGCGAGAGTTCGGCGAAGAAC                                                         >  2:536719/1‑150                                                                                                                                                                                                                             GCAGCCGTTTGGGCCGACCACGGTCAACTTCCCCAGCAACATGGCTGCCGTTGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGTGCGTTGGGTGATGGGCGAGAGTTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGACGTaa                             >  1:52135/1‑156                                                                                                                                                                                                                                                   GTCAACTTCCCCAGCAACATGGCTGCCGTGGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGTGCGTTGGGTGATGGGCGAGAGTTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGACGTCATCTTCAACGGCTCCAGTGGCCGCAAGC  <  2:11242/163‑1                                                                                                                                                                                                                                                                                                                                                                                                                       GGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4865548‑4865790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccacggTCAACTTCCCCAGCAACATGGCTGCCGTGGTCGGCCCAAACGGCTGCGGCAAGTCCAATATCATCGACGCGGTGCGTTGGGTGATGGGCGAGAGTTCGGCGAAGAACCTGCGCGGCGAGTCGATGACCGACGTCATCTTCAACGGCTCCAGTGGCCGCAAGC  <  AE015451/4865814‑4865653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.