New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4865790	30 (0.730)	3 (0.080)	3/316	NT	9.3%	coding (83/3489 nt)	smc	Chromosome partition protein Smc
	?	AE015451	= 4865814	30 (0.780)					coding (59/3489 nt)	smc	Chromosome partition protein Smc

CGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATA  >  AE015451/4865596‑4866046                                                                                                                                                                                                                           |                                                                                                                                                                                                                                         cGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTcga                                                                                                                                                                                                                           >  1:593358/1‑234 (MQ=255)                     ttgtCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAg                                                                                                                                                                                                     >  1:278733/1‑236 (MQ=255)                      tgtCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCa                                                                                                                                                                                                      <  2:672564/234‑1 (MQ=255)                        tCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGc                                                                                                                                                                                                   <  1:574824/235‑1 (MQ=255)                                        tACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTcgac                                                                                                                                                                                                                          <  2:528746/196‑1 (MQ=255)                                                     gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGCCTTGAACCCGGc                                                                                                                                                                                                        >  2:359832/1‑201 (MQ=255)                                                     gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCctc                                                                                                                                                                     >  2:374320/1‑236 (MQ=255)                                                     gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCct                                                                                                                                                                      >  1:713344/1‑235 (MQ=255)                                                          gCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAc                                                                                                                                                                                                                                         <  2:11242‑M2/163‑2 (MQ=255)                                                                           ccGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCAGAACTCTCGCCCATCACCAAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAgg                                                                                                                                                                                     <  1:310905/198‑1 (MQ=255)                                                                                     ttacgTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACAACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgc                                                                                                                                                                                                                   >  1:52135‑M2/3‑135 (MQ=255)                                                                                      gACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCt                                                                                                                                      >  2:737178/1‑234 (MQ=255)                                                                                              tCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGc                                                                                                                              <  1:480291/234‑1 (MQ=255)                                                                                                 tCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATa                                                                                                                          >  2:635541/1‑235 (MQ=255)                                                                                                   gACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCa                                                                                                                            <  1:256912/231‑1 (MQ=255)                                                                                                                 gTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgcggcaagtccaatatcatcga                                                                                                                                                                                               >  2:536719‑M2/1‑107 (MQ=255)                                                                                                                  ttcttcGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTcgcg                                                                                                        >  1:611532/1‑236 (MQ=255)                                                                                                                        gCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATgcg                                                                                                  <  1:163710/236‑1 (MQ=255)                                                                                                                          cGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGcgcg                                                                                                >  1:664434/1‑236 (MQ=255)                                                                                                                              ctctCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCACTAGGCGGt                                                                                                                    >  1:238427/1‑212 (MQ=255)                                                                                                                                  cGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCa                                                                                             <  1:374321/231‑1 (MQ=255)                                                                                                                                                   aCCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgcggcaagtccaatatcatcgacgcggtgcgttgg                                                                                                                                                                                  >  2:716147‑M2/1‑73 (MQ=255)                                                                                                                                                      gcgTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGa                                                                     >  1:474631/1‑235 (MQ=255)                                                                                                                                                         tCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGCACGACTTGAGCCCGGCAAGGCGAATGCACTTCGGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCa                                                                                                                                                   >  2:188250/1‑154 (MQ=255)                                                                                                                                                          cGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAAt                                                                                                                                                                                               >  2:548712/1‑109 (MQ=255)                                                                                                                                                            atgatATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCt                                                                                                                                      <  2:474732/164‑1 (MQ=255)                                                                                                                                                                tatTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGc                                                           <  1:727030/235‑1 (MQ=255)                                                                                                                                                                             gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGcgcg                                                                                                >  1:229540/1‑185 (MQ=255)                                                                                                                                                                             gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCga                                                <  2:473569/233‑1 (MQ=255)                                                                                                                                                                             gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCga                                                >  1:473570/1‑233 (MQ=255)                                                                                                                                                                             gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGAt                                             <  1:635542/236‑1 (MQ=255)                                                                                                                                                                             gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCGCGCGAATGCGCGGCAGGTCACGCGAGACCACg                                                                            >  1:24318/1‑205 (MQ=255)                                                                                                                                                                                    tttGGGCCGACCACGGCAGCCATGTGGCTGGGGAAGTTGACCGTGGGCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACg                                                                            <  2:43866/198‑1 (MQ=255)                                                                                                                                                                                               cACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGcc                            >  1:581641/1‑235 (MQ=255)                                                                                                                                                                                                                     aaGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCCTGGCGCTGGTCCAGCGACAGGTa     >  1:376107/1‑236 (MQ=255)                                                                                                                                                                                                                        ttGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATa  <  1:97261/236‑1 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                         CGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATA  >  AE015451/4865596‑4866046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.