New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4865790 | 30 (0.730) | 3 (0.080) | 3/316 | NT | 9.3% | coding (83/3489 nt) | smc | Chromosome partition protein Smc |
? | AE015451 | = 4865814 | 30 (0.780) | coding (59/3489 nt) | smc | Chromosome partition protein Smc |
GCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCC > AE015451/4865561‑4866020 | gcggATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGcc > 1:672565/1‑235 (MQ=255) tcGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGATGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTgggg < 2:403881/234‑1 (MQ=255) tcGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCa < 1:467030/219‑1 (MQ=255) cGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTcga > 1:593358/1‑234 (MQ=255) ttgtCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAg > 1:278733/1‑236 (MQ=255) tgtCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCa < 2:672564/234‑1 (MQ=255) tCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGc < 1:574824/235‑1 (MQ=255) tACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTcgac < 2:528746/196‑1 (MQ=255) gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCa > 2:757013/1‑145 (MQ=255) gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCa < 1:757014/145‑1 (MQ=255) gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGCCTTGAACCCGGc > 2:359832/1‑201 (MQ=255) gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCctc > 2:374320/1‑236 (MQ=255) gACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCct > 1:713344/1‑235 (MQ=255) gCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAc < 2:11242‑M2/163‑2 (MQ=255) ccGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCAGAACTCTCGCCCATCACCAAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAgg < 1:310905/198‑1 (MQ=255) ttacgTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACAACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgc > 1:52135‑M2/3‑135 (MQ=255) gACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCt > 2:737178/1‑234 (MQ=255) tCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGc < 1:480291/234‑1 (MQ=255) tCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATa > 2:635541/1‑235 (MQ=255) gACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCa < 1:256912/231‑1 (MQ=255) gTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgcggcaagtccaatatcatcga > 2:536719‑M2/1‑107 (MQ=255) ttcttcGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTcgcg > 1:611532/1‑236 (MQ=255) gCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATgcg < 1:163710/236‑1 (MQ=255) cGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGcgcg > 1:664434/1‑236 (MQ=255) ctctCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCACTAGGCGGt > 1:238427/1‑212 (MQ=255) cGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCa < 1:374321/231‑1 (MQ=255) ccAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGtcaacttccccagcaacatggctgccgtggtcggcccaaacggctgcggcaagtccaatatcatcgacgcggt > 2:716147‑M1/1‑56 (MQ=255) aCCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGAccgtggtcggcccaaacggctgcggcaagtccaatatcatcgacgcggtgcgttgg > 2:716147‑M2/1‑73 (MQ=255) gcgTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGa > 1:474631/1‑235 (MQ=255) tCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGtcaacttccccagcaacatggctgccgtggtcggcccaaacggctgcggcaagtccaatatcatcgacgcggtgcgttgggtgatgggcgagagttcggcgaagaac > 2:536719‑M1/1‑43 (MQ=255) tCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGCACGACTTGAGCCCGGCAAGGCGAATGCACTTCGGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCa > 2:188250/1‑154 (MQ=255) cGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAAt > 2:548712/1‑109 (MQ=255) atgatATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCt < 2:474732/164‑1 (MQ=255) tatTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGc < 1:727030/235‑1 (MQ=255) gCAGCCGTTTGGGCCGACCACGGtcaacttccccagcaacatggctgccgttgtcggcccaaacggctgcggcaagtccaatatcatcgacgcggtgcgttgggtgatgggcgagagttcggcgaagaacctgcgcggcgagtcgatgaccgacgtaa > 1:52135‑M1/1‑23 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAg > 2:433477/1‑26 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGcgcg > 1:229540/1‑185 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCga < 2:473569/233‑1 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCga > 1:473570/1‑233 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGAt < 1:635542/236‑1 (MQ=255) gCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCGCGCGAATGCGCGGCAGGTCACGCGAGACCACg > 1:24318/1‑205 (MQ=255) tttGGGCCGACCACGGCAGCCATGTGGCTGGGGAAGTTGACCGTGGGCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACg < 2:43866/198‑1 (MQ=255) cACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGcc > 1:581641/1‑235 (MQ=255) gtcaacttccccagcaacatggctgccgtggtcggcccaaacggctgcggcaagtccaatatcatcgacgcggtgcgttgggtgatgggcgagagttcggcgaagaacctgcgcggcgagtcgatgaccgacgtcatcttcaacggctccagtggccgcaagc < 2:11242‑M1/163‑163 (MQ=255) | GCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGACTCGCCGCGCAGGTTCTTCGCCGAACTCTCGCCCATCACCCAACGCACCGCGTCGATGATATTGGACTTGCCGCAGCCGTTTGGGCCGACCACGGCAGCCATGTTGCTGGGGAAGTTGACCGTGGTCGGGTCGACGAACGACTTGAACCCGGCCAGGCGAATGCACTTCAGGCGCATCGGTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATCATGTTGGCC > AE015451/4865561‑4866020 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |