| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5195895 | 43 (1.050) | 4 (0.100) | 4/320 | NT | 9.8% | coding (620/690 nt) | ybgJ | allophanate hydrolase subunit |
| ? | AE015451 | = 5195952 | 33 (0.850) | coding (563/690 nt) | ybgJ | allophanate hydrolase subunit | |||||
CTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5195837‑5195895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacccCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCTTGCAA < AE015451/5195952‑5195906 CTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCT > 1:606985/1‑101CTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCT < 2:606984/101‑1 ATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCTTGCA > 1:590302/1‑89 ATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCTTGCA < 2:590301/89‑1 gCCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCTTGCAA < 2:14604/48‑1 CTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5195837‑5195895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacccCGGTGCGGTTGTTCGACCGTGAGCGTGAGGGTTACAGCCTCTTGCAA < AE015451/5195952‑5195906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |