New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5195895	43 (1.050)	4 (0.100)	4/320	NT	9.8%	coding (620/690 nt)	ybgJ	allophanate hydrolase subunit
	?	AE015451	= 5195952	33 (0.850)					coding (563/690 nt)	ybgJ	allophanate hydrolase subunit

AGCGCCCCGCCCTGGGTCACGCCAAGGTGGCGCACGCCAAAGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGG  >  AE015451/5195728‑5196139                                                                                                                                                                                                                                 |                                                                                                                                                                                            aGCGCCCCGCCCTGGGTCACGCCAAGGTGGCGCACGCCAAAGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGCACAACCGCACCGGGGTGCGccc                                                                                                                                                                                   >  1:175503/1‑235 (MQ=255)         gcccTGGGTCACGCCAAGGTGGCGCACGCCAAAGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAgg                                                                                                                                                                            <  2:267983/234‑1 (MQ=255)                              gcgcACGCCAAAGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGccc                                                                                                                                                                                   <  2:489490/206‑1 (MQ=255)                                       aaaGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCCCCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCg                                                                                                                                                                                  <  2:199521/198‑1 (MQ=255)                                                   aTCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTCGGCCGCCGTCTGgcg                                                                                                                                >  1:194474/1‑236 (MQ=255)                                                   aTCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGgcg                                                                                                                                >  1:356631/1‑236 (MQ=255)                                                           aCTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCg                                                                                                                                                            >  2:617418/1‑200 (MQ=255)                                                           aCTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCg                                                                                                                                                            <  1:617419/200‑1 (MQ=255)                                                                                  tCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCACGTTCCAGCCACCCGGc                                                                                                                                                             >  2:129224/1‑176 (MQ=255)                                                                                    gATCATCACCTGCTTCATCCCTGCGCCTCCCCATCCCCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCCAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGgc                                                                                                                                 <  1:190830/202‑1 (MQ=255)                                                                                         tcaACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCgg                                                                                                                                                              <  1:470770/168‑1 (MQ=255)                                                                                          caccTGCTTCATCCCTGCGCCTCCACATCACCCCCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGc                                                                                          <  1:125814/232‑1 (MQ=255)                                                                                                 ttCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATAccc                                                                                                                   <  2:762443/203‑1 (MQ=255)                                                                                                   cATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTgg                                                                                      >  1:566346/1‑230 (MQ=255)                                                                                                   cATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTAc                                                                                 >  2:702930/1‑235 (MQ=255)                                                                                                       ccTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAg                                                                             <  1:283489/235‑1 (MQ=255)                                                                                                         tGCGCCTCCCCATCACCACCCATGGCCAGGAATTCGCTGCGCGAACCCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGccc                                                                                                                                                                                   <  2:219662/131‑1 (MQ=255)                                                                                                            gcCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTgg                                                                                                                                  <  2:188320/177‑1 (MQ=255)                                                                                                              cTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCt                                                                                             <  1:405014/212‑1 (MQ=255)                                                                                                              cTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCAACGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCt                                                                                             >  2:405013/1‑212 (MQ=255)                                                                                                                         caccCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCccgccg                                                                                                      <  1:321554/192‑1 (MQ=255)                                                                                                                               tGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTCCCCAGACGAGGGCTGGCCCgg                                                             >  2:760738/1‑227 (MQ=255)                                                                                                                                   cAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCgggga                                                                                                                                               >  2:119946/1‑139 (MQ=255)                                                                                                                                         ttCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGCCGAGGGCTGGCCa                                                               >  1:17929/1‑215 (MQ=255)                                                                                                                                            gCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCAcgcg                                                                                               >  1:82889/1‑180 (MQ=255)                                                                                                                                                   gAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGgccgcc                                                                                                                                        >  2:561872/1‑132 (MQ=255)                                                                                                                                                   gAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGgccgcc                                                                                                                                        <  1:561873/132‑1 (MQ=255)                                                                                                                                                      ccccgCACGAAGCGCACCCGGTCCCCGGGGTGCAAGAGGCTGTACCCCTCGCGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCAcg                                                                                                 <  2:210187/164‑1 (MQ=255)                                                                                                                                                                  cgcACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTCGGCCGCCGTCTGGCGCTCCGCAATACCCACGCTGCCCGCCGCCACGCGCTTGc                                                                                          >  2:46752/1‑163 (MQ=255)                                                                                                                                                                       ccGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAgg             <  1:702931/235‑1 (MQ=255)                                                                                                                                                                             aCCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCa                                                                              >  1:86485/1‑164 (MQ=255)                                                                                                                                                                                 ggTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCgg  <  1:656454/236‑1 (MQ=255)                                                                                                                                                                                   ttGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGgc                                                                                                                                                                                           <  2:14604‑M2/49‑3 (MQ=255)                                                                                                                                                                                    tGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGgggtgcgcttcgtgccggtttcgcgcagcgaattcctggccat                                                                                                                                                  <  2:590301‑M2/89‑44 (MQ=255)                                                                                                                                                                                    tGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGgggtgcgcttcgtgccggtttcgcgcagcgaattcctggccat                                                                                                                                                  >  1:590302‑M2/1‑46 (MQ=255)                                                                                                                                                                                    tGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAaca      >  1:685636/1‑229 (MQ=255)                                                                                                                                                                                        agagGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGgggtgcgcttcgtgccggtttcgcgcagcgaattcctggccatgggtggtgatgtggag                                                                                                                                  <  2:606984‑M2/101‑60 (MQ=255)                                                                                                                                                                                        agagGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGgggtgcgcttcgtgccggtttcgcgcagcgaattcctggccatgggtggtgatgtggag                                                                                                                                  >  1:606985‑M2/1‑42 (MQ=255)                                                                                                                                                                                        agagGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGAc                                                                           >  2:77060/1‑156 (MQ=255)                                                                                                                                                                                               gTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCgcg                                                                                       >  2:236427/1‑135 (MQ=255)                                                                                                                                                                                                tAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCCGCCCGCCGCCACGCGCCTGCGTGGGGTACTCAGGCGAGGGCTGGCCAGGCGCtcgc                                                      >  2:140417/1‑168 (MQ=255)                                                                                                                                                                                                         cgctcacgGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGa                                                                            >  2:650315/1‑138 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                            AGCGCCCCGCCCTGGGTCACGCCAAGGTGGCGCACGCCAAAGCGCCCGGCATCCTGTAACTGGCACAACGGCGTACTGGCCTCGATCATCAACTGCTTCATCCCTGCGCCTCCACATCACCACCCATGGCCAGGAATTCGCTGCGCGAAACCGGCACGAAGCGCACCCGGTCACCGGGTTGCAAGAGGCTGTAACCCTCACGCTCACGGTCGAACAACCGCACCGGGGTGCGCCCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGG  >  AE015451/5195728‑5196139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.