New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5798368 =	27 (0.660)	3 (0.080)	3/322	NT	11.6%	coding (1495/1590 nt)	PP_5077	conserved protein of unknown function
	?	AE015451	5798388 =	20 (0.510)					coding (1475/1590 nt)	PP_5077	conserved protein of unknown function

AGCTCCGAGGCGTCGGCCCAGGCTTACGTCAAGGCCCAGGGTGGCGACTATCGCTACTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5798500‑5798368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggttgGCGAAACTGCCGTAAGTCACGACGTACAGAG  >  AE015451/5798388‑5798418                                                                                                                                                                      AGCTCCGAGGCGTCGGCCCAGGCTTACGTCAAGGCCCAGGGTGGCGACTATCGCTACTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTGGCGAAACTGCCGTAAGTC               <  2:481560/151‑1        AGGCGTCGGCCCAGGCTTACGTCAAGGACCAGGGTGGCGACTATCGCTACTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTGGC                               <  2:53374/128‑1                                                         CTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAG  <  1:293697/108‑1                                                         CTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAG  >  2:293696/1‑108                                                                                                                                                                      AGCTCCGAGGCGTCGGCCCAGGCTTACGTCAAGGCCCAGGGTGGCGACTATCGCTACTTCAAGAAAAACCTGCAGGGCAAGCCTCTGTACGTCGTGACTTACGGCAGTTTCGCCAACCGCGACGCAGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5798500‑5798368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggttgGCGAAACTGCCGTAAGTCACGACGTACAGAG  >  AE015451/5798388‑5798418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.