New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5798368 =	27 (0.660)	3 (0.080)	3/322	NT	11.6%	coding (1495/1590 nt)	PP_5077	conserved protein of unknown function
	?	AE015451	5798388 =	20 (0.510)					coding (1475/1590 nt)	PP_5077	conserved protein of unknown function

AGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAGCCAC  >  AE015451/5798155‑5798556                                                                                                                                                                                                                                          |                                                                                                                                                                         aGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg                                                                                                                                                                        <  1:56535/236‑1 (MQ=255)           gCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTAAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGc                                                                                                                                                                 >  2:392845/1‑233 (MQ=255)                 aGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAg                                                                                                                                                           >  2:258998/1‑233 (MQ=255)                                            tCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc                                                                                                                                                         <  2:524570/208‑1 (MQ=255)                                                gcgcAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGttttt                                                                                                                         <  1:24134/236‑1 (MQ=255)                                                                 aaaGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGCCCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGGTGGCg                                                                                                                                                                        >  2:205942/1‑172 (MQ=255)                                                                   aGCTAGAATTCGCTTAGCTCCTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGt                                                                                                        <  1:217767/234‑1 (MQ=255)                                                                                                 gggTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTCCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc                                                                                                                                                         <  1:145637/155‑1 (MQ=255)                                                                                                 gggTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTCCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc                                                                                                                                                         >  2:145636/1‑155 (MQ=255)                                                                                                     agctccgaggcgtcggcccaggcttacgtcaaggcccagggtggcgactatcgctacttcaagaaaaacctgcagggcaagcctctgtacgtcgtgacttacggcagtttcgccaaccgcgacgcagcggttgGCGAAACTGCCGTAAGTc                                                                                                                                                         <  2:481560‑M2/18‑1 (MQ=255)                                                                                                        gccgccCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCt                                                                 <  1:392846/236‑1 (MQ=255)                                                                                                            aggcgtcggcccaggcttacgtcaaggaccagggtggcgactatcgctacttcaagaaaaacctgcagggcaagcctctgtacgtcgtgacttacggcagtttcgccaaccgcgacgcagcggttgGc                                                                                                                                                                         <  2:53374‑M2/2‑1 (MQ=255)                                                                                                                       tCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGt                                                                                                        <  1:382021/182‑1 (MQ=255)                                                                                                                           cGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCGACGCAGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGAt                                              <  1:45559/236‑1 (MQ=255)                                                                                                                             ggCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCt                                            <  1:66868/236‑1 (MQ=255)                                                                                                                                                   aCGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCtt                      <  1:258999/236‑1 (MQ=255)                                                                                                                                                             cttcaagaaaaacctgcagggcaagcctctgtacgtcgtgacttacggcagtttcgccaaccgcgacgcagcggttgGCGAAACTGCCGTAAGTCACGACGTACagag                                                                                                                                            <  1:293697‑M2/31‑1 (MQ=255)                                                                                                                                                             cttcaagaaaaacctgcagggcaagcctctgtacgtcgtgacttacggcagtttcgccaaccgcgacgcagcggttgGCGAAACTGCCGTAAGTCACGACGTACagag                                                                                                                                            >  2:293696‑M2/78‑108 (MQ=255)                                                                                                                                                                    tGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAg      >  2:383096/1‑235 (MQ=255)                                                                                                                                                                               tACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACg                                                                    <  1:232924/162‑1 (MQ=255)                                                                                                                                                                                       tGGACCTTCGCTGGCAATTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACTTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTg                              <  1:12845/192‑1 (MQ=255)                                                                                                                                                                                       ctctgtacgtcgtgacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAg                                                                                                                  >  2:293696‑M1/32‑108 (MQ=255)                                                                                                                                                                                       ctctgtacgtcgtgacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAg                                                                                                                  <  1:293697‑M1/77‑1 (MQ=255)                                                                                                                                                                                        ggACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGc                                                           >  1:295278/1‑162 (MQ=255)                                                                                                                                                                                        ggACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGc                                                           <  2:295277/162‑1 (MQ=255)                                                                                                                                                                                                  tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg                                                                                                                                                                        >  2:605037/1‑43 (MQ=255)                                                                                                                                                                                                  tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg                                                                                                                                                                        <  1:605038/43‑1 (MQ=255)                                                                                                                                                                                                  tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGc                                                                                                              >  2:435010/1‑101 (MQ=255)                                                                                                                                                                                                  tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGc                                                                                                              <  1:435011/101‑1 (MQ=255)                                                                                                                                                                                                    gacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCt                                                          <  2:481560‑M1/133‑1 (MQ=255)                                                                                                                                                                                                            ttGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCCCCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCgg              <  1:249783/187‑1 (MQ=255)                                                                                                                                                                                                                    gcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGTCCTTGACGTAAGCCTGGGCCGACGCCt                                                                 <  2:53374‑M1/126‑1 (MQ=255)                                                                                                                                                                                                                              gCGTCGCGGTTGGCGAAACTGCCTTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTcc                <  1:640811/167‑1 (MQ=255)                                                                                                                                                                                                                                gTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATGCCAGcccc  >  2:547680/1‑177 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                         AGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAGCCAC  >  AE015451/5798155‑5798556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.