New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5798368 = | 27 (0.660) | 3 (0.080) | 3/322 | NT | 11.6% | coding (1495/1590 nt) | PP_5077 | conserved protein of unknown function |
? | AE015451 | 5798388 = | 20 (0.510) | coding (1475/1590 nt) | PP_5077 | conserved protein of unknown function |
TGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAG > AE015451/5798143‑5798552 | tGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCg < 1:440169/236‑1 (MQ=255) aGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg < 1:56535/236‑1 (MQ=255) gCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTAAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGc > 2:392845/1‑233 (MQ=255) aGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAg > 2:258998/1‑233 (MQ=255) tCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc < 2:524570/208‑1 (MQ=255) gcgcAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGttttt < 1:24134/236‑1 (MQ=255) aaaGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGCCCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGGTGGCg > 2:205942/1‑172 (MQ=255) aGCTAGAATTCGCTTAGCTCCTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGt < 1:217767/234‑1 (MQ=255) gggTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTCCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc < 1:145637/155‑1 (MQ=255) gggTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTCCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTc > 2:145636/1‑155 (MQ=255) gccgccCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCt < 1:392846/236‑1 (MQ=255) tCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGt < 1:382021/182‑1 (MQ=255) cGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCGACGCAGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGAt < 1:45559/236‑1 (MQ=255) ggCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCt < 1:66868/236‑1 (MQ=255) aCGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCtt < 1:258999/236‑1 (MQ=255) tGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTcg > 2:646684/1‑77 (MQ=255) tGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTcg < 1:646685/77‑1 (MQ=255) tGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAg > 2:383096/1‑235 (MQ=255) tACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACg < 1:232924/162‑1 (MQ=255) tGGACCTTCGCTGGCAATTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACTTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTg < 1:12845/192‑1 (MQ=255) ctctgtacgtcgtgacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAg < 1:293697‑M1/77‑1 (MQ=255) ctctgtacgtcgtgacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAg > 2:293696‑M1/32‑108 (MQ=255) ggACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGc > 1:295278/1‑162 (MQ=255) ggACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGc < 2:295277/162‑1 (MQ=255) tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg < 1:605038/43‑1 (MQ=255) tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCg > 2:605037/1‑43 (MQ=255) tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGc < 1:435011/101‑1 (MQ=255) tGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGc > 2:435010/1‑101 (MQ=255) gacttacggcagtttcgcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCt < 2:481560‑M1/133‑1 (MQ=255) ttGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCCCCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCgg < 1:249783/187‑1 (MQ=255) gcCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGTCCTTGACGTAAGCCTGGGCCGACGCCt < 2:53374‑M1/126‑1 (MQ=255) | TGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGACGTACAGAGGCTTGCCCTGCAGGTTTTTCTTGAAGTAGCGATAGTCGCCACCCTGGGCCTTGACGTAAGCCTGGGCCGACGCCTCGGAGCTGGTACCAAGGATCTGCACCACATAATTGCCCGGCTTCTGTCCGGCATACCAG > AE015451/5798143‑5798552 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |