New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2524241 =	39 (0.950)	3 (0.080)	3/318	NT	8.1%	coding (963/1686 nt)	PP_2213	putative acyl‑CoA synthetase
	?	AE015451	2524282 =	31 (0.800)					coding (1004/1686 nt)	PP_2213	putative acyl‑CoA synthetase

TTGGGCTTACGGCTTGTATTACGCCGTTACCGGTCCGTTGTCGCTGGGGCACGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGC  >  AE015451/2524019‑2524468                                                                                                                                                                                                                               |                                                                                                                                                                                                                                    ttGGGCTTACGGCTTGTATTACGCCGTTACCGGTCCGTTGTCGCTGGGGCACGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGa                                                                                                                                                                                                                        <  1:250820/236‑1 (MQ=255)                              ccGGTCCGTTGTCGCTGGGGCACGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCcgac                                                                                                                                                                                           <  1:256023/236‑1 (MQ=255)                              ccGGTCCGTTGTCGCTGGGGCACGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCcg                                                                                                                                                                                             >  1:326069/1‑234 (MQ=255)                                                    cGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCa                                                                                                                                                                       <  2:271301/234‑1 (MQ=255)                                                    cGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCa                                                                                                                                                                       <  1:278529/234‑1 (MQ=255)                                                       caccacGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGAt                                                                                                                                                                   >  1:589374/1‑235 (MQ=255)                                                        accacGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCCGGGTCGc                                                                                                                                                                                               >  1:504275/1‑206 (MQ=255)                                                                            gTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAAcc                                                                                                                                                                                                                             >  1:362104/1‑156 (MQ=255)                                                                            gTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAAcc                                                                                                                                                                                                                             <  2:362103/156‑1 (MQ=255)                                                                            gTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTgg                                                                                                                                             <  1:62131/236‑1 (MQ=255)                                                                              tCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGGCAGCAGTGCCGGCGAACCGCt                                                                                                                                                                                                                          >  2:468095/1‑157 (MQ=255)                                                                                aGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCg                                                                                                                                                                                                                  >  1:604040/1‑163 (MQ=255)                                                                                     ccaccacgatgcggtggccggggatggcatagccggcagaacccaggtgcaccggatgctgcaggccatggtggttgcacagcaccatgcccagttcggtctggccgtagtgatcgtgaatggtcacgcccagctcgtcg                                                                                                                                                                                                                                    <  2:571359‑M1/2‑1 (MQ=255)                                                                                              cgcCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTgg                                                                                                                                             <  1:15973/218‑1 (MQ=255)                                                                                               gcCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGc                                                                                                                                                                                  >  1:264070/1‑180 (MQ=255)                                                                                               gcCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAacc                                                                                                                           <  1:384866/235‑1 (MQ=255)                                                                                                              aaGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTgcagc                                                                                                            <  1:618777/235‑1 (MQ=255)                                                                                                                            cAACCTGCCCGGCTCTGTCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGATCCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTgg                                                                                             <  1:721067/236‑1 (MQ=255)                                                                                                                              aCCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCcggcg                                                                                                                                                                                          >  2:570949/1‑141 (MQ=255)                                                                                                                                     cGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCg                                                                                    >  1:319420/1‑236 (MQ=255)                                                                                                                                     cGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCCGCAGCATCCGGTGCACCTGGGTTCTGcc                                                                                     <  1:666362/235‑1 (MQ=255)                                                                                                                                      ggCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGaa                                                                                                                                                                   >  2:291784/1‑155 (MQ=255)                                                                                                                                       gCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAAcc                                                                                                                                                                                                                             <  2:710345/97‑1 (MQ=255)                                                                                                                                       gCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAAcc                                                                                                                                                                                                                             >  1:710346/1‑97 (MQ=255)                                                                                                                                           gCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATgggg                                                                                                                                     >  2:272228/1‑179 (MQ=255)                                                                                                                                                   cgTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGt                                                                                                                                                                                <  1:203785/130‑1 (MQ=255)                                                                                                                                                     tATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCgg                                                                    >  1:633532/1‑236 (MQ=255)                                                                                                                                                             gCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCa                                                                 >  1:299867/1‑231 (MQ=255)                                                                                                                                                              cTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCAt                                                           >  1:330255/1‑236 (MQ=255)                                                                                                                                                              cTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGGTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCAt                                                           >  1:392259/1‑236 (MQ=255)                                                                                                                                                                             aaaGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGAc                                              <  2:330254/234‑1 (MQ=255)                                                                                                                                                                               cgATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGAc                                              <  1:249544/231‑1 (MQ=255)                                                                                                                                                                                       cGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGa                                               >  2:733426/1‑223 (MQ=255)                                                                                                                                                                                          cACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTa                                    <  1:80765/231‑1 (MQ=255)                                                                                                                                                                                           ggccgtagtgatcgtgaatggtcacgcccagctcgtCGGCGAACCGCTGAACCCCGAAGTGATCCGc                                                                                                                                                                                                       >  2:320293‑M1/37‑67 (MQ=255)                                                                                                                                                                                           ggccgtagtgatcgtgaatggtcacgcccagctcgtCGGCGAACCGCTGAACCCCGAAGTGATCCGc                                                                                                                                                                                                       <  1:320294‑M1/31‑1 (MQ=255)                                                                                                                                                                                                  aaGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGAc                                              <  1:736492/213‑1 (MQ=255)                                                                                                                                                                                                  aaGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGAc                                              >  2:736491/1‑213 (MQ=255)                                                                                                                                                                                                          ccTGCGGGTGGTCAGCAGGGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCAGTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGtt                                                                                          <  2:112275/161‑1 (MQ=255)                                                                                                                                                                                                            ggcgggcggTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATc                                                                         <  2:72057/175‑1 (MQ=255)                                                                                                                                                                                                             tggtcacgcccagctcgtCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTGACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGc                                                                             <  2:507977‑M1/153‑1 (MQ=255)                                                                                                                                                                                                                       agcagTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCa                                                            <  2:603878/178‑1 (MQ=255)                                                                                                                                                                                                                       agcagTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGc  <  1:224901/236‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                    TTGGGCTTACGGCTTGTATTACGCCGTTACCGGTCCGTTGTCGCTGGGGCACGCCACCACGTTCTACGATGGCCCGTTCAGTGTCGAGAGCTGCGCCCGGGTGATCGACAAGCTGGGTATCACCAACCTGGCCGGCTCGCCCACCGCGTATCGCTTGCTGATTGCGGCGGGCAAAGATTTCTCGGCACCGATCAAGGGCCGCCTGCGGGTGGTCAGCAGTGCCGGCGAACCGCTGAACCCCGAAGTGATCCGCTGGTTCGCCGACGAGCTGGGCGTGACCATTCACGATCACTACGGCCAGACCGAACTGGGCATGGTGCTGTGCAACCACCATGGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGC  >  AE015451/2524019‑2524468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.