New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3441809	23 (0.560)	3 (0.080)	3/322	NT	10.9%	coding (568/3270 nt)	PP_3062	putative Pyocin R2_PP, tail length determination protein
	?	AE015451	= 3441822	27 (0.690)					coding (581/3270 nt)	PP_3062	putative Pyocin R2_PP, tail length determination protein

GCGGGCAAGGAATCGCTCAAGTCGAATATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCAGCGACATGGCCAAGT  >  AE015451/3441593‑3442043                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           gCGGGCAAGGAATCGCTCAAGTCGAATATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTggtc                                                                                                                                                                                                                           >  1:321282‑M2/1‑230 (MQ=255)                   aaGTCGAATATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCTCCGGCCTGGATCTGGa                                                                                                                                                                                                       >  1:180309/1‑236 (MQ=255)                        gAATATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACa                                                                                                                                                                                                     <  2:381747/233‑1 (MQ=255)                         aaTATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACa                                                                                                                                                                                                     <  2:423999/232‑1 (MQ=255)                          atatCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGACGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTggtcggctacgtcattgcgtgacata                                                                                                                                                                                                     >  1:716826‑M2/1‑205 (MQ=255)                              cGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCGGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAAGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTggtcg                                                                                                                                                                                                                          >  2:148020‑M2/1‑201 (MQ=255)                                                 aCGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCg                                                                                                                                                                                                                    <  1:500815/193‑1 (MQ=255)                                                      cgccgcTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCg                                                                                                                                                                                                                    <  2:383898/188‑1 (MQ=255)                                                                 tgCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAg                                                                                                                                                                                                   <  1:19040/194‑1 (MQ=255)                                                                                              gCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATgcgc                                                                                                                                                                                   >  1:537542/1‑181 (MQ=255)                                                                                                                 cgATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTgg                                                                                                                                                                                                        >  2:518510/1‑141 (MQ=255)                                                                                                                 cgATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTgg                                                                                                                                                                                                        <  1:518511/141‑1 (MQ=255)                                                                                                                           tGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTggtcggctacgtcattgcgtgacatacccgtgtctt                                                                                                                                                                                           >  2:724596‑M2/1‑108 (MQ=255)                                                                                                                           tGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTggtcggctacgtcattgcgtgacatacccgtgtctt                                                                                                                                                                                           <  1:724597‑M2/144‑37 (MQ=255)                                                                                                                                     aacaaGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGGTCGCGGTCGGc                                                                                                                                                         >  2:97606/1‑168 (MQ=255)                                                                                                                                      acaaGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGAc                                                                                    >  1:352227/1‑236 (MQ=255)                                                                                                                                                             aCCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACt                                                             >  1:651581/1‑236 (MQ=255)                                                                                                                                                                  gACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATc                                                                                          <  1:711399/202‑1 (MQ=255)                                                                                                                                                                                      aaGACACGGGTATGTCACGCAATGACGTAGCCGACCagctggttgaccaggtcggctacgtcattgcgtgacatacccgtgtctttggccgtgccgatcaccgtccgggtaagctgctgttcctcgggcttgttggcgatatca                                                                                                                                >  2:724596‑M1/1‑36 (MQ=255)                                                                                                                                                                                      aaGACACGGGTATGTCACGCAATGACGTAGCCGACCagctggttgaccaggtcggctacgtcattgcgtgacatacccgtgtctttggccgtgccgatcaccgtccgggtaagctgctgttcctcgggcttgttggcgatatca                                                                                                                                <  1:724597‑M1/144‑109 (MQ=255)                                                                                                                                                                                       aGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAgg                                                                             <  2:401963/194‑1 (MQ=255)                                                                                                                                                                                             gggTATGTCACGCAATGACGTAGCCGACCCGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATc                                                                                          <  2:612660/175‑1 (MQ=255)                                                                                                                                                                                                tATGTCACGCAATGACGTAGCCGACCagctggttgaccaggtcggctacgtcattgcgtgacatacccgtgtctttggccgtgccgatcaccgtccgggtaagctgctgttcctcgggcttgttggcgatatcagccttgatcgcgatgtcacggatgatcgcttgatagttcgcgctgatcatcgtcgtcacagcagcggcgcccgtagccaccaccgccctgccgatat                               >  1:716826‑M1/1‑26 (MQ=255)                                                                                                                                                                                                tATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAgg                           >  2:397517/1‑234 (MQ=255)                                                                                                                                                                                                tATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAg                            >  1:619395/1‑234 (MQ=255)                                                                                                                                                                                                      aCGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCg                       >  2:548199/1‑233 (MQ=255)                                                                                                                                                                                                       cGCAATGACGTAGCCGACCGGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTAGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAgct                                                                            >  1:464705/1‑177 (MQ=255)                                                                                                                                                                                                          aaTGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCa                 >  1:429896/1‑235 (MQ=255)                                                                                                                                                                                                            tGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCAGCg              <  1:548200/236‑1 (MQ=255)                                                                                                                                                                                                                 tAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATc                                                                                          <  2:677060/155‑1 (MQ=255)                                                                                                                                                                                                                 tAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATc                                                                                          >  1:677061/1‑155 (MQ=255)                                                                                                                                                                                                                     cGACCagctggttgaccaggtcggctacgtcattgcgtgacatacccgtgtctttggccgtgccgatcaccgtccgggtaagctgctgttcctcgggcttgttggcgatatcagctttgatcgcgatgtcacggatgatcgcttgatagttcgcgctgatcatcgtcggcaccgcagcggcgcccgtagccaccaccgccctgccg                                   >  2:148020‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                      gACCagctggttgaccaggtcggctacgtcattgcgtgacatacccgtgtctttggccgtgccgatcaccgtccgggtaagctgctgttcctcgggcttgttggcgatatcagccttgatcgcgatgtcacggatgatcgcttgatagttcgcgctgatcatcgtcggcacagcagcggcgcccgtagccaccaccgccctgccgatattcgacttgagcgattccttgcccgc      >  1:321282‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                       aCCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCAGCGACATGGCCa     >  2:565687/1‑234 (MQ=255)                                                                                                                                                                                                                        ccTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCa                 <  1:741543/221‑1 (MQ=255)                                                                                                                                                                                                                         cTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCAGCGACATGGCCAAGt  <  1:336682/235‑1 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           GCGGGCAAGGAATCGCTCAAGTCGAATATCGGCAGGGCGGTGGTGGCTACGGGCGCCGCTGCTGTGCCGACGATGATCAGCGCGAACTATCAAGCGATCATCCGTGACATCGCGATCAAGGCTGATATCGCCAACAAGCCCGAGGAACAGCAGCTTACCCGGACGGTGATCGGCACGGCCAAAGACACGGGTATGTCACGCAATGACGTAGCCGACCTGGTCAACCAGCTGGTCGGCGCCGGCATGGATCTGGACAAGGCGCTGTCGTATGCGCCGGTCGCGGCCAAGTTCGCGGTCGGCCAAGGCGCCTCGGGCGTCGACACCGCGTCGATGATCCAGGCGTTGGAGCAAAACGCCAAGATCAGCGACCCCAAGGTCATGCAGCAGGCACTGGAGGCCATCGCCTACCAAGGCCAGGCGGGCAGCTTCGAGGCCAGCGACATGGCCAAGT  >  AE015451/3441593‑3442043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.