mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 115 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 8,825 | 0 | T | A | 73.0% | 664.9 / 289.8 | 348 | A196A (GCT→GCA) | talB | transaldolase B |
| * | CP009273 | 8,810 | 0 | T | C | 71.2% | 594.8 / 300.7 | 359 | D191D (GAT→GAC) | talB | transaldolase B |
| * | CP009273 | 8,804 | 0 | T | C | 70.3% | 535.0 / 293.0 | 337 | N189N (AAT→AAC) | talB | transaldolase B |
| * | CP009273 | 8,801 | 0 | G | C | 69.8% | 595.0 / inf | 338 | A188A (GCG→GCC) | talB | transaldolase B |
| * | CP009273 | 8,852 | 0 | T | C | 69.0% | 434.8 / 281.4 | 305 | S205S (TCT→TCC) | talB | transaldolase B |
| * | CP009273 | 8,868 | 0 | C | G | 68.8% | 494.8 / inf | 292 | Q211E (CAG→GAG) | talB | transaldolase B |
| * | CP009273 | 8,873 | 0 | C | T | 68.5% | 403.8 / 279.6 | 292 | Y212Y (TAC→TAT) | talB | transaldolase B |
| * | CP009273 | 8,771 | 0 | T | C | 68.0% | 462.4 / 293.3 | 319 | F178F (TTT→TTC) | talB | transaldolase B |
| * | CP009273 | 8,880 | 0 | G | C | 67.7% | 455.7 / 315.6 | 280 | E215Q (GAG→CAG) | talB | transaldolase B |
| * | CP009273 | 8,879 | 0 | A | G | 67.6% | 385.7 / 266.6 | 279 | K214K (AAA→AAG) | talB | transaldolase B |
| * | CP009273 | 8,786 | 0 | T | C | 66.9% | 405.3 / 316.6 | 314 | L183L (CTT→CTC) | talB | transaldolase B |
| * | CP009273 | 8,753 | 0 | G | C | 66.8% | 497.3 / inf | 337 | V172V (GTG→GTC) | talB | transaldolase B |
| * | CP009273 | 8,762 | 0 | C | T | 66.5% | 404.8 / inf | 328 | I175I (ATC→ATT) | talB | transaldolase B |
| * | CP009273 | 8,783 | 0 | T | C | 66.1% | 397.2 / inf | 319 | I182I (ATT→ATC) | talB | transaldolase B |
| * | CP009273 | 8,888 | 0 | T | C | 65.6% | 348.1 / 283.8 | 282 | G217G (GGT→GGC) | talB | transaldolase B |
| * | CP009273 | 360,752 | 0 | A | G | 65.2% | 352.8 / inf | 311 | V331A (GTG→GCG) | lacI | DNA‑binding transcriptional repressor |
| * | CP009273 | 8,738 | 0 | T | C | 63.2% | 329.3 / inf | 323 | C167C (TGT→TGC) | talB | transaldolase B |
| * | CP009273 | 8,732 | 0 | T | C | 62.8% | 330.9 / inf | 331 | R165R (CGT→CGC) | talB | transaldolase B |
| * | CP009273 | 8,705 | 0 | C | G | 62.8% | 375.9 / inf | 328 | T156T (ACC→ACG) | talB | transaldolase B |
| * | CP009273 | 8,741 | 0 | G | C | 62.8% | 368.3 / inf | 325 | A168A (GCG→GCC) | talB | transaldolase B |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 84 (0.610) | 60 (0.480) | 54/264 | 3.1 | 46.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 65 (0.530) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 95 (0.680) | 64 (0.520) | 53/264 | 3.3 | 45.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 71 (0.570) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4532507 | 126 (0.910) | 21 (0.160) | 20/278 | 12.2 | 14.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 130 (1.000) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 128 (0.920) | 11 (0.080) | 10/278 | 17.2 | 8.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 130 (1.000) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 1205074 | 92 (0.660) | 7 (0.060) | 7/266 | 18.6 | 6.4% | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | CP009273 | 2465376 = | 121 (0.970) | pseudogene (226/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1891006 | 154 (1.110) | 3 (0.020) | 3/290 | 23.1 | 2.0% | intergenic (+1/‑183) | nudL/sdaA | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase/L‑serine dehydratase 1 |
| ? | CP009273 | = 3633344 | 145 (1.070) | intergenic (‑264/‑127) | uspB/uspA | universal stress (ethanol tolerance) protein B/universal stress global response regulator | |||||