New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 1485085 | 57 (0.890) | 38 (0.960) +GTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC |
32/170 | NT | 68.4% | intergenic (‑115/‑74) | gapC/cybB | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment)/cytochrome b561 |
? | CP009273 | = 1857027 | 0 (0.000) | intergenic (‑341/‑1) | msrB/gapA | methionine sulfoxide reductase B/glyceraldehyde‑3‑phosphate dehydrogenase A |
AGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATATGACTATCAAAGTAGGTATCAACGGTTTTGGCCGTATCGGTCGCATTGTTTTCCGTGCTGCTCAGAAACGTTCTGACATCGAGATCGTTGCAATCAACGACCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCC > CP009273/1856881‑1857174 | aGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATgga > 1:958999‑M2/1‑147 (MQ=255) agTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacct > 1:16072‑M2/1‑141 (MQ=255) tGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctca > 2:187357‑M2/1‑139 (MQ=255) ggCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaa < 1:425198‑M2/149‑14 (MQ=255) gtcagtcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacacc > 2:129174‑M2/1‑131 (MQ=255) gtcagtcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacacc > 2:389939‑M2/1‑131 (MQ=255) tcagtcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacacca > 2:424676‑M2/1‑130 (MQ=255) tcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcat > 1:857894‑M2/1‑126 (MQ=255) tcGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcat > 2:143985‑M2/1‑126 (MQ=255) gcgTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcata < 1:887197‑M2/149‑26 (MQ=255) aaTGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacact < 2:632484‑M2/149‑30 (MQ=255) tAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcag < 1:879961‑M2/150‑37 (MQ=255) aGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatca > 1:509355‑M2/1‑113 (MQ=255) acaGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagt < 1:283193‑M2/150‑42 (MQ=255) caGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagtt < 1:379607‑M2/150‑43 (MQ=255) caGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagtt > 2:126470‑M2/1‑108 (MQ=255) gattgattTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggc > 2:436649‑M2/1‑105 (MQ=255) tttGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatc > 2:391168‑M2/1‑99 (MQ=255) tttGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatc > 1:899223‑M2/1‑99 (MQ=255) gTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcac < 1:3220‑M2/149‑54 (MQ=255) tCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc > 2:3220‑M2/1‑95 (MQ=255) aaTGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgtt < 2:923411‑M2/150‑60 (MQ=255) aTGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttt > 1:11400‑M2/1‑90 (MQ=255) tGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgtttt < 2:186502‑M2/150‑62 (MQ=255) aTTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttca > 1:488647‑M2/1‑87 (MQ=255) ttGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcag > 2:13279‑M2/1‑86 (MQ=255) acacGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtac < 2:735231‑M2/150‑68 (MQ=255) acacGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtac > 1:894471‑M2/1‑83 (MQ=255) gCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgttt < 2:1043846‑M2/149‑77 (MQ=255) cTTGATGCTTCGGAAGGTTTTTGTACTTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcaccccaaaaacaccatcatacactaaatcagcaagatggcagcatcaccccgttttcagtacgttacgtttca < 2:921775‑M2/150‑79 (MQ=255) tAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatgg > 2:959510‑M2/1‑60 (MQ=255) aGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatg < 1:266705‑M2/147‑90 (MQ=255) ggTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatg < 1:810657‑M2/146‑90 (MQ=255) ggTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatg < 2:142518‑M2/146‑90 (MQ=255) gTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagat < 1:267643‑M2/150‑95 (MQ=255) tGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcc > 1:638145‑M2/1‑51 (MQ=255) gTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgccc > 2:1023087‑M2/1‑50 (MQ=255) ttttACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatccc > 1:735231‑M2/1‑46 (MQ=255) cAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatccccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccat > 1:985080‑M2/1‑41 (MQ=255) cAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccat < 1:759829‑M2/150‑110 (MQ=255) cAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccat < 1:186674‑M2/150‑110 (MQ=255) ccTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggggattgcccatcccgccatcctggtc > 2:887197‑M2/1‑34 (MQ=255) cTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtct > 1:829530‑M2/1‑33 (MQ=255) cTTTTATTCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtc < 1:665052‑M2/149‑117 (MQ=255) ttCCCTAACAAATAGCTGGTGGAATATggagcacctcaaaaacactatcatacactaaatcagtaagttggcagcatcaccccgttttcagcacgttacgtttcactgtgagaatggagattgctcatcccgccatcctggtctaagcct < 2:458980‑M2/150‑124 (MQ=255) ttCACTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcct < 1:496333‑M2/150‑124 (MQ=255) aCTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctgga > 2:1040664‑M2/1‑24 (MQ=255) aCTAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacaataaatcaggaagatggcagcatcatcccgttttcagtacgttacgtttcactgtgagaatggagatagcccatcccgccatcctggtctaagcctgg < 2:405382‑M2/149‑126 (MQ=255) tAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctgga < 2:717846‑M2/148‑127 (MQ=255) tAACAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcc < 2:4152‑M2/144‑123 (MQ=255) aaCAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcct > 1:4152‑M2/1‑21 (MQ=255) aCAAATAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaag < 1:657386‑M2/149‑130 (MQ=255) aaTAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggat < 2:875608‑M2/149‑133 (MQ=255) aTAGCTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatc < 1:649675‑M2/149‑134 (MQ=255) cTGGTGGAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattt > 1:141671‑M2/1‑12 (MQ=255) ggtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaatttt < 2:37633‑M2/149‑140 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttca > 1:1043846‑M2/1‑9 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttc > 2:496333‑M2/1‑9 (MQ=255) gtggAATATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttc > 2:186674‑M2/1‑9 (MQ=255) aaTATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatccg > 1:186502‑M2/1‑5 (MQ=255) aaTATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatccg > 1:470738‑M2/1‑5 (MQ=255) aaTATggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatcc < 2:838676‑M2/149‑145 (MQ=255) tatggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccccgttttcagtacgttacgtttcactgtgagaatggagattgcccatcccgccatcctggtctaagcctggaaaggatcaattttcatccgaa < 1:641188‑M2/150‑148 (MQ=255) | AGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATATGACTATCAAAGTAGGTATCAACGGTTTTGGCCGTATCGGTCGCATTGTTTTCCGTGCTGCTCAGAAACGTTCTGACATCGAGATCGTTGCAATCAACGACCTGTTAGACGCTGATTACATGGCATACATGCTGAAATATGACTCC > CP009273/1856881‑1857174 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |