Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | CP009273 | 2,770,391 | IS2 (+) +5 bp | 20.0% | coding (156‑160/201 nt) | ypjJ → | uncharacterized protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 2770391 = | 38 (0.660) | 8 (0.130) | 8/276 | NT | 16.9% | coding (156/201 nt) | ypjJ | uncharacterized protein |
? | CP009273 | 2989720 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 2770395 | 38 (0.660) | 11 (0.180) | 11/276 | NT | 21.8% | coding (160/201 nt) | ypjJ | uncharacterized protein |
? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region |
ATTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTGGTGCAG > CP009273/2770242‑2770539 | aTTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCtgtg < 1:186267/150‑1 (MQ=255) tCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACg < 2:351040/150‑1 (MQ=255) tAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGa < 1:410289/150‑1 (MQ=255) aaCGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAAc > 1:124189/1‑150 (MQ=255) aCGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAAcg > 1:443089/1‑150 (MQ=255) cGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAAcgc > 1:794776/1‑150 (MQ=255) gggCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggcccc < 2:910589‑M1/150‑13 (MQ=255) caTGGCGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACCCCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGAc < 2:323861/149‑1 (MQ=255) aTGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGAcc > 1:631222/1‑150 (MQ=255) gACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCg > 2:540382/1‑149 (MQ=255) aCGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCa < 2:250825/150‑1 (MQ=255) ataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGAcc < 2:451749‑M1/32‑1 (MQ=255) ccGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCg < 2:483542/150‑1 (MQ=255) aGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGc > 2:614606/1‑150 (MQ=255) aGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGc > 2:329083/1‑150 (MQ=255) gCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCt < 1:903306/150‑1 (MQ=255) cATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCtt > 2:87043/1‑150 (MQ=255) cTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACt > 2:755837/1‑150 (MQ=255) cgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACtga > 1:451749‑M1/104‑149 (MQ=255) cccGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAg > 1:1024708/1‑150 (MQ=255) ccGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaat > 2:743479‑M1/1‑104 (MQ=255) gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTa > 1:941462‑M1/98‑149 (MQ=255) ggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTg < 2:590285‑M1/60‑1 (MQ=255) tACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACt > 1:280167/1‑150 (MQ=255) aCTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACt > 1:423813/1‑149 (MQ=255) cTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTg < 1:577234/149‑1 (MQ=255) tGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac > 1:229694‑M1/1‑88 (MQ=255) cACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACa < 2:107330/149‑1 (MQ=255) cGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATaa < 1:614606/150‑1 (MQ=255) tCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagact < 1:894812‑M1/149‑76 (MQ=255) cAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTat > 1:941684/1‑149 (MQ=255) gTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtc < 1:724086‑M1/150‑80 (MQ=255) gCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTatgaat > 1:982502/1‑148 (MQ=255) cACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg < 2:229694‑M1/150‑84 (MQ=255) aCGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactgcccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg > 1:496378‑M1/1‑66 (MQ=255) aCGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAg > 1:568443/1‑149 (MQ=255) cGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactgcccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga < 2:496378‑M1/150‑86 (MQ=255) cGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCGCCCTGAACTGACAATAAAGAGGTTATGAATGAGCa < 2:185056/150‑1 (MQ=255) ggTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCaa < 1:573237/150‑1 (MQ=255) tAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAaca > 1:125693/1‑150 (MQ=255) tAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAaca < 1:540382/150‑1 (MQ=255) aGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa > 2:583487‑M1/1‑61 (MQ=255) gTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAAcacca > 1:519457/1‑149 (MQ=255) tCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACcaca > 1:507310/1‑150 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATgg > 2:203921‑M1/49‑149 (MQ=255) tCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATggg < 1:1031852/150‑1 (MQ=255) tCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATggg > 1:803385/1‑150 (MQ=255) atgggttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGc > 1:943228‑M1/47‑150 (MQ=255) gttaagtgataacagatgtctggaaatataggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGc > 1:779956‑M1/43‑150 (MQ=255) cacCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTg > 2:428651/1‑149 (MQ=255) gCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGc > 2:637568/1‑148 (MQ=255) aGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggc > 2:311804‑M1/1‑40 (MQ=255) gggATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCgaga > 2:221099/1‑149 (MQ=255) cGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCAcgccg < 2:125693/150‑1 (MQ=255) ggATATCACAGGAGTCCTGGCTGTATGCGGCGAACGCCGCCGGGCCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGACCTCACAATAAAGAGGTCGTGAATGAGCTACTGCCCATGGCGCCTGCATAGAGATATCAggtcgc < 2:491877/150‑1 (MQ=255) atatCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCgcgc > 1:622890/1‑150 (MQ=255) aGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAg < 2:423813/150‑1 (MQ=255) taggggcaaatccaGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAg > 2:457938‑M1/15‑149 (MQ=255) tGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTg > 1:788290/1‑150 (MQ=255) tgtACGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaa < 1:743479‑M1/148‑143 (MQ=255) gtACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTGGTGCag > 2:623015/1‑149 (MQ=255) | ATTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTGTGTACGCCGAACGCCGCAGGACCGCAGCGGACCGTATGCTTGACTGATGAGTATCACCCTGAACTGACAATAAAGAGGTTATGAATGAGCAACACCACATGGGGCCTGCAGCGAGATATCACGCCGCGCCTGGGAGCACGTCTGGTGCAG > CP009273/2770242‑2770539 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |