mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 111 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 8,888 | 0 | T | C | 74.6% | 974.0 / inf | 518 | G217G (GGT→GGC) | talB | transaldolase B |
| * | CP009273 | 8,609 | 0 | T | C | 74.2% | 717.5 / 277.0 | 383 | I124I (ATT→ATC) | talB | transaldolase B |
| * | CP009273 | 8,600 | 0 | T | C | 73.7% | 709.0 / 291.5 | 392 | D121D (GAT→GAC) | talB | transaldolase B |
| * | CP009273 | 8,603 | 0 | T | G | 73.4% | 888.3 / 313.0 | 387 | A122A (GCT→GCG) | talB | transaldolase B |
| * | CP009273 | 8,606 | 0 | T | C | 73.2% | 702.9 / 291.5 | 388 | G123G (GGT→GGC) | talB | transaldolase B |
| * | CP009273 | 8,900 | 0 | G | C | 71.7% | 884.2 / inf | 467 | V221V (GTG→GTC) | talB | transaldolase B |
| * | CP009273 | 8,903 | 0 | T | G | 71.5% | 986.5 / inf | 473 | V222V (GTT→GTG) | talB | transaldolase B |
| * | CP009273 | 8,588 | 0 | A | G | 71.4% | 578.0 / 301.0 | 361 | K117K (AAA→AAG) | talB | transaldolase B |
| * | CP009273 | 8,591 | 0 | C | G | 71.0% | 648.2 / inf | 362 | L118L (CTC→CTG) | talB | transaldolase B |
| * | CP009273 | 8,858 | 0 | T | C | 69.9% | 590.7 / inf | 524 | coding (621/954 nt) | talB | transaldolase B |
| * | CP009273 | 8,856 | 0 | T | A | 69.7% | 575.7 / inf | 523 | S207T (TCT→ACT) | talB | transaldolase B |
| * | CP009273 | 8,573 | 0 | A | C | 69.6% | 667.8 / inf | 342 | A112A (GCA→GCC) | talB | transaldolase B |
| * | CP009273 | 8,576 | 0 | A | G | 69.3% | 500.4 / 307.0 | 339 | K113K (AAA→AAG) | talB | transaldolase B |
| * | CP009273 | 8,561 | 0 | A | T | 69.1% | 530.2 / inf | 337 | S108S (TCA→TCT) | talB | transaldolase B |
| * | CP009273 | 8,925 | 0 | A | G | 69.0% | 641.0 / inf | 448 | I230V (ATC→GTC) ‡ | talB | transaldolase B |
| * | CP009273 | 8,927 | 0 | C | T | 68.6% | 639.1 / inf | 450 | I230I (ATC→ATT) ‡ | talB | transaldolase B |
| * | CP009273 | 8,582 | 0 | G | C | 68.5% | 535.6 / inf | 338 | L115L (CTG→CTC) ‡ | talB | transaldolase B |
| * | CP009273 | 8,580 | 0 | C | A | 68.3% | 430.8 / inf | 338 | L115M (CTG→ATG) ‡ | talB | transaldolase B |
| * | CP009273 | 8,564 | 0 | T | C | 67.6% | 436.8 / inf | 327 | I109I (ATT→ATC) | talB | transaldolase B |
| * | CP009273 | 8,954 | 0 | C | T | 64.6% | 413.5 / inf | 377 | C239C (TGC→TGT) | talB | transaldolase B |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 161 (1.050) | 7 (0.050) | 7/278 | 22.0 | 4.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 145 (1.010) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4532507 | 156 (1.020) | 4 (0.030) | 4/278 | 24.7 | 2.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 145 (1.010) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 768434 | 146 (0.960) | 3 (0.020) | 3/278 | 25.7 | 1.4% | coding (1521/1569 nt) | cydA | cytochrome d terminal oxidase, subunit I |
| ? | CP009273 | 4036882 = | 280 (1.950) | coding (105/627 nt) | dsbA | periplasmic protein disulfide isomerase I | |||||
| * | ? | CP009273 | 3253679 = | 233 (1.530) | 3 (0.020) | 3/282 | 25.9 | 1.3% | coding (2099/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| ? | CP009273 | 3390002 = | 221 (1.520) | coding (1153/1470 nt) | rng | ribonuclease G | |||||