mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BA000036 | 1,994,312 | 0 | G | C | 42.3% | 127.2 / 254.7 | 156 | intergenic (‑191/+293) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| * | BA000036 | 1,994,392 | 0 | A | G | 33.8% | 192.4 / 129.6 | 139 | intergenic (‑271/+213) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| * | BA000036 | 1,994,404 | 0 | C | A | 31.1% | 196.8 / 120.1 | 133 | intergenic (‑283/+201) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| * | BA000036 | 414,931 | 0 | C | A | 25.0% | 65.0 / 11.5 | 40 | S73Y (TCC→TAC) | Cgl0391 | ABC‑type transporter, ATPase component |
| * | BA000036 | 1,994,429 | 0 | A | T | 22.1% | 283.5 / 64.3 | 122 | intergenic (‑308/+176) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | = 495978 | 51 (0.550) | 4 (0.060) | 4/444 | 11.7 | 7.5% | intergenic (+2/‑251) | codon recognized:ACC/codon recognized:ACC | tRNA‑Thr/tRNA‑Thr |
| ? | BA000036 | 496304 = | 61 (0.890) | intergenic (+3/‑36) | codon recognized:ACC/codon recognized:ATG | tRNA‑Thr/tRNA‑Met | |||||