| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 2653669 | 231 (1.290) | 5 (0.030) +CGGCAT |
4/228 | NT | 2.1% | coding (598/1161 nt) | safA | spore coat assembly protein SafA |
| ? | NZ_CP034943 | 2653670 = | 240 (1.280) | coding (597/1161 nt) | safA | spore coat assembly protein SafA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2653532‑2653669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTG > NZ_CP034943/2653670‑2653789 |||||| GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATTAGCCGGATAATGATGATAAGGCTGAACAGCCG > 1:758753/1‑140GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCG > 1:1024445/1‑140GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCG > 1:1796761/1‑140GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCG > 1:2615462/1‑140 ATCCATGTGGCTGATAGATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:2453491/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:1255511/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:471850/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:1340743/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:1227228/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:1175804/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 2:1167651/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:543472/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:543217/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:396719/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:377721/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:3005672/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:2318283/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:2274285/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:2132587/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:2016925/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:1961388/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:1765702/140‑1 ATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:1338003/140‑1 ATCCATGGGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGCCGGC < 1:2132581/140‑1 TAAGCTTGTGCCGGATAGTACGGATAGCATAATCCTGATCCTGGAAGAATTGGCGAAACAGGCACCGGACACGGTACGAAATGAGCCGGATAATGATAATAAGGCTGAACAGCCGGCATCGGCATATTCGGAACTGTGTt > 2:2286272/1‑139 TACGGATAGCATAATCCTGATCCTGGAAGAATTGGCGAAACAGGCACCGGACACGGTACGAAATGAGCCGGATAATGATAATAAGGCTGAACAGCCGGCATCGGCATATTCGGAACTGTGTGATGAACGTTTTCCTCTTC > 1:311690/1‑140 cACCGGACACGGTACGAAATGAGCCGGATAATGATAATAAGGCTGAACAGCCGGCATCGGCATATTCGGAACTGTGTGATGAACGTTTTCCTCTTCTATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATAT > 1:2996533/2‑137 cACCGGACACGGTACGAAATGAGCCGGATAATGATAATAAGGCTGAACAGCCGGCATCGGCATATTCGGAACTGTGTGATGAACGTTTTCCTCTTCTATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATAT < 2:2996533/136‑1 TAAGGCTGAACAGCCGGCATCGGCATATTCGGAACTGTGTGATGAACGTTTTCCTCTTCTATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTG < 2:311690/140‑1 |||||| GTATCCATGTGGCTGATACATTGGATAAGCTTGTGCCGGATAGTACGGGTAGCATAATCCTGACCCTGGAAGAATTGGTGAAACAGGAACCGGACATGGCACGAAATGAGCCGGATAATGATGATAAGGCTGAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2653532‑2653669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCATATTCGGAACTGTGTGATGAACGTTTTCTTCTTCCATACCGCCTACCTCTGGCGCCTTTGGCATATTAGGCATATTCGGATAATTTGCATTTTCCATATTACTCATAGCCTCCTG > NZ_CP034943/2653670‑2653789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |