| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 1328839 | 323 (1.240) | 7 (0.030) | 5/252 | NT | 2.1% | coding (315/1359 nt) | htrA | serine protease HtrA |
| ? | NZ_CP034943 | 1328847 = | 326 (1.250) | coding (307/1359 nt) | htrA | serine protease HtrA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACAAAGAGCTGTTTGACTGAGCCTGAAGATTTGTAATGCCGACAATCGCCGGTGAAATGTCTTCCACCATATCTGAGATTTTAGAAGCATCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1328714‑1328839‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGCTAGATTCAGAGGACGTGCTTTTAGCTGTAACCGATTGTGTTTGCTGCTGGCTGGATGATTGTTTTGAAGTGTCCTGAGCATCATGGTC > NZ_CP034943/1328847‑1328940 AACAAAGAGCTGTTTGATTGTGCCTGAAGATTTGTAATACCGACAATCGCTGGTGAAAGGTCTTCTACCATATCTGAGATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGA > 2:3191931/1‑140AACAAAGAGCTGTTTGATTGTGCCTGAAGATTTGTAATACCGACAATCGCTGGTGAAAGGTCTTCTACCATATCTGAGATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGA > 2:4251800/1‑140 TCGCTGGTGAAAGGTCTTCTACCATATCTGAGATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGAGGAGGTGCTTGTTGCTGTAACAGATTGCGTTTGCTGCTGGCTGGAT < 2:1004375/140‑1 TATCTGAGATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGAGGAGGTGCTTGTTGCTGTAACAGATT < 1:603865/96‑1 TATCTGAGATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGAGGAGGTGCTTGTTGCTGTAACAGATT > 2:603865/1‑96 ATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGAGGAGGTGCTTGTTGCTGTAACAGATTGCGTTTGCTGCTGGCTGGATGATTGTTTTGCAGTGTCCTGAGAATCATGGTC < 1:3191931/140‑1 ATTTTAGAAGAGTCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTTTTTT‑‑TAGATTCAGAGGAGGTGCTTGTTGCTGTAACAGATTGCGTTTGCTGCTGGCTGGATGATTGTTTTGCAGTGTCCTGAGAATCATGGTC < 1:4251800/140‑1 AACAAAGAGCTGTTTGACTGAGCCTGAAGATTTGTAATGCCGACAATCGCCGGTGAAATGTCTTCCACCATATCTGAGATTTTAGAAGCATCCTCGCTCTTGAATGCAGATGAGCTGCTTGAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1328714‑1328839‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGCTAGATTCAGAGGACGTGCTTTTAGCTGTAACCGATTGTGTTTGCTGCTGGCTGGATGATTGTTTTGAAGTGTCCTGAGCATCATGGTC > NZ_CP034943/1328847‑1328940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |